PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_5093_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | WRKY | ||||||||
Protein Properties | Length: 108aa MW: 12528.2 Da PI: 9.0901 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.5 | 8.8e-31 | 24 | 84 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqK++ g+++prsYYrCt++ +C+v+k+v+rs+edp+++eitY+g H+++ cra_locus_5093_iso_1_len_321_ver_3 24 DDGYSWRKYGQKHILGAKYPRSYYRCTYRhiqNCWVTKQVQRSDEDPTIFEITYRGAHTCN 84 8***************************9999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.0E-30 | 15 | 84 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-27 | 22 | 85 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.2E-40 | 23 | 85 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.643 | 24 | 86 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-27 | 24 | 84 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010193 | Biological Process | response to ozone | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
XKTLPTWTEQ VKVSSDNGLE GPSDDGYSWR KYGQKHILGA KYPRSYYRCT YRHIQNCWVT 60 KQVQRSDEDP TIFEITYRGA HTCNLAANNN SVASPEKKEL HIYXXRSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-19 | 24 | 83 | 9 | 68 | OsWRKY45 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022844606.1 | 1e-52 | probable WRKY transcription factor 53 | ||||
Swissprot | Q8H0Y8 | 3e-44 | WRK41_ARATH; Probable WRKY transcription factor 41 | ||||
TrEMBL | A0A1S4C5W4 | 5e-50 | A0A1S4C5W4_TOBAC; probable WRKY transcription factor 53 | ||||
STRING | XP_009613243.1 | 4e-50 | (Nicotiana tomentosiformis) |
Publications ? help Back to Top | |||
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