PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5090_iso_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 738aa    MW: 81469 Da    PI: 6.7088
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5090_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.5e-192078357
                                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                         k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  cra_locus_5090_iso_4_len_3048_ver_3 20 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78
                                         5679*****************************************************97 PP

2START152.92.6e-481643582205
                                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT CS
                                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdet 75 
                                          +aee+++e+++ka+ ++  Wv+++ +++g               ea+ra+g+v  +++  v+e+l+d++ W ++
  cra_locus_5090_iso_4_len_3048_ver_3 164 IAEETLTEFLSKATGTAVEWVQMPGMKPG--------------PEASRACGLVGLEPT-RVAEILKDRPSWYRD 222
                                          7899********************55554..............479************.8888888888***** PP

                                          -SEEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSE CS
                                START  76 lakaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvv 143
                                          ++ +++l++ s+g  g+++l +++l+a+++l+p Rdf+ +Ry+  +++g++v++++S++++q+ p     +++v
  cra_locus_5090_iso_4_len_3048_ver_3 223 CRTVDILNAMSTGngGTIELLYMQLYAPTTLAPaRDFWLLRYTSVMEDGSLVVCERSLNNTQNGPAmppVHHFV 296
                                          ***************************************************************9998889**** PP

                                          E-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                                START 144 RaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                                          Rae+lpSg+li+p+++g+s +++v+h dl+ +++++++r+l++s++   ++t++a+l+++++
  cra_locus_5090_iso_4_len_3048_ver_3 297 RAEMLPSGYLIRPCEGGGSIIHIVDHLDLEPWSVPEVIRPLYESSTLLSQRTTMAALRQLRQ 358
                                          **********************************************************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.7751579IPR001356Homeobox domain
SMARTSM003891.3E-151783IPR001356Homeobox domain
SuperFamilySSF466894.15E-171983IPR009057Homeodomain-like
CDDcd000861.32E-162080No hitNo description
PfamPF000461.4E-162178IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.6E-192278IPR009057Homeodomain-like
CDDcd146861.01E-672111No hitNo description
PROSITE profilePS5084825.657154368IPR002913START domain
SuperFamilySSF559619.89E-33155355No hitNo description
CDDcd088751.39E-72158359No hitNo description
SMARTSM002346.6E-35163359IPR002913START domain
PfamPF018522.4E-45164358IPR002913START domain
Gene3DG3DSA:3.30.530.202.2E-22164356IPR023393START-like domain
PfamPF086701.5E-9685731IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MAVTSTCKDA ASKMGMDNGK YVRYTPEQVE ALERLYHECP KPSSLRRQQL IRECPILSNI  60
EPKQIKVWFQ NRRCREKQRK EASRLQAVNR KLTAMNKLLM EENDRLQKQV SQLVYENSYF  120
RQHTQNATLA TTDNSCESVV TSGQPHLTPQ HPPRDASPAG LLSIAEETLT EFLSKATGTA  180
VEWVQMPGMK PGPEASRACG LVGLEPTRVA EILKDRPSWY RDCRTVDILN AMSTGNGGTI  240
ELLYMQLYAP TTLAPARDFW LLRYTSVMED GSLVVCERSL NNTQNGPAMP PVHHFVRAEM  300
LPSGYLIRPC EGGGSIIHIV DHLDLEPWSV PEVIRPLYES STLLSQRTTM AALRQLRQIS  360
QEVSQPTVTG WGRRPAALRA LGQRLSKGFN EAVNGFTDEG WSMIESDGID DVTVLVNSSP  420
SKLMGANFNY ANGFSSFSNA VLCAKASMLL QNVPPAILLR FLREHRSEWA DSGIDAYSAA  480
AVKAGPCSLP VSRVGGSFGG QVILPLAHTI EHEEFMEVIR LENMSHYRED MIMPGDIFLL  540
QLCSGVDENA VGTCSELIFA PIDASFSDDA PLLPSGFRII PLDSKVDPSS PNRTLDLAST  600
LEVGPSGNKV SGENSRHSGS AKSVMTIAFQ FAFEMHLQEN VAAMARQYVR SIISSVQRVA  660
LALSPSSLGP NAGLRTPPGT PEAQTLARWI CQSYRFFLGV ELLKPATDGS ESVLKTLWHH  720
SDALICCTLK VLFQFFNF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027084668.10.0homeobox-leucine zipper protein ATHB-15-like
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A068UKR50.0A0A068UKR5_COFCA; Uncharacterized protein
STRINGVIT_04s0008g03250.t010.0(Vitis vinifera)
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]