PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_507_iso_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 369aa    MW: 40923 Da    PI: 4.3724
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_507_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.65e-1958111356
                                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                         k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  cra_locus_507_iso_3_len_1946_ver_3  58 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 111
                                         566899***********************************************9 PP

2HD-ZIP_I/II130.28.4e-4257149193
                         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalke 75 
                                         ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy  Lk++y++lk+
  cra_locus_507_iso_3_len_1946_ver_3  57 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGILKANYESLKH 131
                                         69************************************************************************* PP

                         HD-ZIP_I/II  76 enerLekeveeLreelke 93 
                                         + e+L++++e+L +e++e
  cra_locus_507_iso_3_len_1946_ver_3 132 SYESLQHDNEALVKEIRE 149
                                         *************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.01E-1944115IPR009057Homeodomain-like
PROSITE profilePS5007117.28153113IPR001356Homeobox domain
SMARTSM003894.4E-1856117IPR001356Homeobox domain
PfamPF000463.2E-1658111IPR001356Homeobox domain
CDDcd000867.18E-1758114No hitNo description
Gene3DG3DSA:1.10.10.607.5E-2060119IPR009057Homeodomain-like
PRINTSPR000311.1E-58493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000311.1E-593109IPR000047Helix-turn-helix motif
PfamPF021831.4E-18113155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MKRLGSSDSL GALMSICPTS ADEHNQGNSH VYPREFQSML EGLDEEGCVE ESGHIPEKKR  60
RLSVDQVKAL EKNFEVENKL EPERKVKLAQ ELGLQPRQVA VWFQNRRARW KTKQLERDYG  120
ILKANYESLK HSYESLQHDN EALVKEIREL KGKLQEDKME SKISVKEEGM MMMVSDECEE  180
ERAKRAPPQM VDIIPECCDD EEDDINEATD LNFESFKNNN GGGGGLIMGS SLFTDFKDGS  240
SDSDSSAILN EENNNNNIST SPNNNAAISS SSAAGGGGGV GGILVQSPHQ FFNCSSINGF  300
QFSTDSKEEI LLGGDATAHK AEAAASAYQP QFVKIEEHNF FSGDESCSTF FSDDQPPSLH  360
WGDCPEDWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105113RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074840.11e-165homeobox-leucine zipper protein ATHB-6
RefseqXP_027179939.11e-165homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A068U0031e-164A0A068U003_COFCA; Uncharacterized protein
STRINGXP_004288161.11e-127(Fragaria vesca)