PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5072_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 267aa    MW: 30855.9 Da    PI: 8.5774
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5072_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.61.2e-313080151
                                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                        krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  cra_locus_5072_iso_2_len_986_ver_3 30 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 80
                                        79***********************************************96 PP
2K-box97.81.6e-32103193999
                               K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                                         l +++++s ++++ +Lk+++e Lq+ +R+llGedL +L+ keL++Le+qLe+slk++Rs+K++ +l+q+++lq+k
  cra_locus_5072_iso_2_len_986_ver_3 103 LPANESQSTYHDYVRLKARVEVLQQHHRNLLGEDLVNLNTKELEHLEHQLETSLKQVRSTKTKCMLDQLSDLQQK 177
                                         677899********************************************************************* PP

                               K-box  84 ekelqeenkaLrkkle 99 
                                         e++l e+nk Lr+kl+
  cra_locus_5072_iso_2_len_986_ver_3 178 EQMLAEDNKILRRKLD 193
                                         **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-402281IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.2772282IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-332398IPR002100Transcription factor, MADS-box
CDDcd002651.61E-442398No hitNo description
PRINTSPR004041.1E-322444IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002478IPR002100Transcription factor, MADS-box
PfamPF003192.6E-263178IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-324459IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-325980IPR002100Transcription factor, MADS-box
PfamPF014861.2E-26105192IPR002487Transcription factor, K-box
PROSITE profilePS5129714.842108198IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
XSQREKEVFC SWRKEKERVI KMGRGRVELK RIENKINRQV TFAKRRNGLL KKAYELSVLC  60
DAEVALIIFS NRGKLYEFCS GSSMTETLER YQRCTYGSID ADLPANESQS TYHDYVRLKA  120
RVEVLQQHHR NLLGEDLVNL NTKELEHLEH QLETSLKQVR STKTKCMLDQ LSDLQQKEQM  180
LAEDNKILRR KLDQSLADIH LRLTWEGGEQ VPQCDNRLPP HSQGFFQPLG LNSNLQMGYN  240
QDGSNGMMNG NMTPNHNVNG FVPGLML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A6e-26961921101Developmental protein SEPALLATA 3
4ox0_B6e-26961921101Developmental protein SEPALLATA 3
4ox0_C6e-26961921101Developmental protein SEPALLATA 3
4ox0_D6e-26961921101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012080419.11e-120MADS-box protein CMB1 isoform X2
SwissprotQ8LLR21e-110MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLQ689E41e-125Q689E4_GENTR; MADS box transcription factor
STRINGXP_010257958.11e-117(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]