PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_5046_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

STAT

Protein Properties

Length: 788aa MW: 88359.9 Da PI: 7.3605

Description

STAT family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_5046_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	STAT	205.9	3.1e-64	255	376	1	122
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqL 74 ldv+l+na+g+pv+k++evvasLlya++g++ve+++daeapLL+sydG+e++s+drp+kl+ GrasfklkisqL cra_locus_5046_iso_2_len_2437_ver_3 255 LDVILMNAFGHPVHKEIEVVASLLYANNGAPVEETNDAEAPLLTSYDGIEYASSDRPSKLISGRASFKLKISQL 328 8*********************************************************************** PP STAT 75 sskcdnrLfrikfeipklkkypfleavskpirCisrsrntrsssltkk 122 sskcdnrLfrikfeipkl+ ypflea+s++irCisr+rn+r+ss+++k cra_locus_5046_iso_2_len_2437_ver_3 329 SSKCDNRLFRIKFEIPKLSGYPFLEAISHSIRCISRNRNARTSSMSWK 376 ******************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF49899	1.34E-5	47	173	IPR013320	Concanavalin A-like lectin/glucanase domain
Gene3D	G3DSA:3.30.505.10	2.1E-6	642	727	IPR000980	SH2 domain
SuperFamily	SSF55550	4.71E-8	644	742	IPR000980	SH2 domain
PROSITE profile	PS50001	10.36	648	705	IPR000980	SH2 domain

Sequence ? help Back to Top
Protein Sequence Length: 788 aa Download sequence Send to blast
CKLVKKRGKG LVGFFGLLIK KLLEAGIMEV VNGIEEKDYI LLKNLRVELT DKVQEANGVF 60 SLCFWLYLSS NGLSVPSAIL HQEHPVTKLS VPFLLLNEKK KVVLFPLLFL HEEVSLTANL 120 TNWREVPCIS TELDLPLNKW VHVGFEVSQN VLLLHINGET AGEKSLTSSP NNDLRPGGMK 180 RLLLPSIIGD NHGCQAYVHC AEVLPLKLPI KNHYAKDPPI QLSIDSSSAS EIEEDSDGVW 240 SIVGGKASCR RNFSLDVILM NAFGHPVHKE IEVVASLLYA NNGAPVEETN DAEAPLLTSY 300 DGIEYASSDR PSKLISGRAS FKLKISQLSS KCDNRLFRIK FEIPKLSGYP FLEAISHSIR 360 CISRNRNART SSMSWKKSPS EVHLVNGSQS PGPNDGSSEL LHNVVCEAKQ SPSSKRIKLG 420 QEKPFAMFND ALTCKKVDEE CNSHACPNNE VDNVRETNFG GRPVNRGGSD NISSDSENSE 480 TTKSDPISML SERNIISDSI VFKYCLGGQS ERVHLLKEIA TSVRHTELAN FADQVSLFSG 540 CSHHRHQIMI AKRLIEDGAK VWNFIAKSNH HVLWENLVSG IKEHFTSMVS CTRSLTFQDL 600 QLLRRISGCQ ELVSQENFEK IWCWLYPVAF TLSQDWANGM WSSVTPKWIE GFITKEESES 660 LLQGPGGFQE PGTFVLRFPT SRSWPHPDAG NLVVTYISTD HTIRHRLLSL DFVYSSKSRN 720 VKSLQEMLLE EPELSHLRRY IFTWXCLHSF LFIPLRGAQY PRTGAELRFK DGAIERIRML 780 ELLGIFAV

Sequence ? help Back to Top

Protein Sequence Length: 788 aa Download sequence Send to blast

CKLVKKRGKG LVGFFGLLIK KLLEAGIMEV VNGIEEKDYI LLKNLRVELT DKVQEANGVF  60
SLCFWLYLSS NGLSVPSAIL HQEHPVTKLS VPFLLLNEKK KVVLFPLLFL HEEVSLTANL  120
TNWREVPCIS TELDLPLNKW VHVGFEVSQN VLLLHINGET AGEKSLTSSP NNDLRPGGMK  180
RLLLPSIIGD NHGCQAYVHC AEVLPLKLPI KNHYAKDPPI QLSIDSSSAS EIEEDSDGVW  240
SIVGGKASCR RNFSLDVILM NAFGHPVHKE IEVVASLLYA NNGAPVEETN DAEAPLLTSY  300
DGIEYASSDR PSKLISGRAS FKLKISQLSS KCDNRLFRIK FEIPKLSGYP FLEAISHSIR  360
CISRNRNART SSMSWKKSPS EVHLVNGSQS PGPNDGSSEL LHNVVCEAKQ SPSSKRIKLG  420
QEKPFAMFND ALTCKKVDEE CNSHACPNNE VDNVRETNFG GRPVNRGGSD NISSDSENSE  480
TTKSDPISML SERNIISDSI VFKYCLGGQS ERVHLLKEIA TSVRHTELAN FADQVSLFSG  540
CSHHRHQIMI AKRLIEDGAK VWNFIAKSNH HVLWENLVSG IKEHFTSMVS CTRSLTFQDL  600
QLLRRISGCQ ELVSQENFEK IWCWLYPVAF TLSQDWANGM WSSVTPKWIE GFITKEESES  660
LLQGPGGFQE PGTFVLRFPT SRSWPHPDAG NLVVTYISTD HTIRHRLLSL DFVYSSKSRN  720
VKSLQEMLLE EPELSHLRRY IFTWXCLHSF LFIPLRGAQY PRTGAELRFK DGAIERIRML  780
ELLGIFAV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027127004.1	0.0	SH2 domain-containing protein A-like
TrEMBL	A0A068UD02	0.0	A0A068UD02_COFCA; Uncharacterized protein
STRING	XP_009769180.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9394	23	25