PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_49517_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 343aa    MW: 39207.2 Da    PI: 8.2461
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_49517_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.7e-06169188120
                                           EEETTTTEEESSHHHHHHHH CS
                               zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                           ++C++C+k+F+r  n++ H+
  cra_locus_49517_iso_1_len_1028_ver_3 169 FSCSICNKTFNRYNNMQMHM 188
                                           89*****************9 PP
2zf-C2H216.13.1e-05253275123
                                           EEETTTTEEESSHHHHHHHHHHT CS
                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                           + C +Cgk+F  k + ++H +++
  cra_locus_49517_iso_1_len_1028_ver_3 253 FICRKCGKTFAVKGDWRTHEKNC 275
                                           89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.75E-5165192No hitNo description
Gene3DG3DSA:3.30.160.608.1E-6169188IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.554169196IPR007087Zinc finger, C2H2
SMARTSM003550.059169191IPR015880Zinc finger, C2H2-like
PfamPF128749.5E-5169188No hitNo description
PROSITE patternPS000280171191IPR007087Zinc finger, C2H2
SMARTSM00355120216248IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-5239273IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.11E-6239273No hitNo description
SMARTSM0035532253273IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.559253273IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
LFLPIPNMGV RNYHVHDMNM CFQAPTSFVE WLKPPPPPLP PPPPPSSTMS FFQLPLLYQQ  60
EDQKQEINID ETIQCLPLLS KLTEEKAVKE ELQENEMQKK TSFGKVALHI GLPNTNSDVI  120
SDYENTKPFD EKEKIAVEKN LCSNGSNFNN ESRFWIPTQA QILVGPMQFS CSICNKTFNR  180
YNNMQMHMWG HGSEFRKGPE SLRGTQPAAM LRLPCYCCAQ GCKNNINHPX SKALKDFRTL  240
QTHYKRKHGT KPFICRKCGK TFAVKGDWRT HEKNCGKLWY CTCGSDFKHK RSLKDHIRSF  300
GKGHSPHPSI EGFDQYDEKE CITTCGSEDE AAALSFENXL GKN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027083750.11e-157zinc finger protein WIP3-like
SwissprotQ9SGD11e-114ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A068VJJ31e-155A0A068VJJ3_COFCA; Uncharacterized protein
STRINGPOPTR_0004s19460.11e-152(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]