PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4916_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 810aa    MW: 88297.8 Da    PI: 6.3342
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4916_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.4e-19563357
                                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                         k  ++t+eq+e+Le++++++++ps  +r++L k++    +++ +q+kvWFqNrR +ek+
  cra_locus_4916_iso_4_len_2843_ver_3  5 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIKECpilsNIEPKQIKVWFQNRRCREKQ 63
                                         6789*****************************************************97 PP
2START164.86e-521533602204
                                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT CS
                                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdet 75 
                                          +aee+++e++ ka+ ++  Wv++  +++g++++ +++ s+++ g a+ra+g+v  +++   +e+l+d++ W ++
  cra_locus_4916_iso_4_len_2843_ver_3 153 VAEETLAEFLGKATGTAVDWVQMIGMKPGPDSIGIVAVSRNSIGVAARACGLVSLEPT-KIAEILKDRPTWFRD 225
                                          7899******************************************************.7777777777***** PP

                                          -SEEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSE CS
                                START  76 lakaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvv 143
                                          ++ +++l vi +g  g+++l +++++a+++l++ Rdf+++Ry+ + ++g++vi+++S++  +  p+   s  +v
  cra_locus_4916_iso_4_len_2843_ver_3 226 CRCIDVLSVIPTGngGTIELVYMQTYAPTTLAAaRDFWTLRYTTTVEDGSLVICERSLTTSTGGPTgppSTCFV 299
                                          ************************************************************999999888999** PP

                                          E-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                                START 144 RaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                                          Rae+lpSg+li+p+++g+s v++v+h+dl++++++++lr+l++s+ + ++k+++a+l++ +
  cra_locus_4916_iso_4_len_2843_ver_3 300 RAEMLPSGCLIRPCEGGGSIVHIVDHIDLDAWSVPEVLRPLYESSKIIAQKMTMAALRHIR 360
                                          *********************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.726164IPR001356Homeobox domain
SMARTSM003895.4E-16268IPR001356Homeobox domain
SuperFamilySSF466891.33E-16567IPR009057Homeodomain-like
CDDcd000866.98E-17565No hitNo description
PfamPF000462.1E-16563IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-18763IPR009057Homeodomain-like
CDDcd146862.25E-65796No hitNo description
PROSITE profilePS5084825.143143371IPR002913START domain
CDDcd088753.27E-70147363No hitNo description
SMARTSM002346.4E-48152362IPR002913START domain
SuperFamilySSF559613.98E-37153364No hitNo description
PfamPF018523.2E-49153360IPR002913START domain
Gene3DG3DSA:3.30.530.203.0E-22154357IPR023393START-like domain
PfamPF086704.2E-37687810IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    Send to blast
MDSSKYVRYT PEQVEALERV YAECPKPSSL RRQQLIKECP ILSNIEPKQI KVWFQNRRCR  60
EKQRKEASRL QTVNRKLSAM NKLLMEENDR LQKQVSHLVY ENGYMRQQLH TVSTATTDTS  120
CESVVMTGQN QQQNPTTQHP QRDANNPAGL LTVAEETLAE FLGKATGTAV DWVQMIGMKP  180
GPDSIGIVAV SRNSIGVAAR ACGLVSLEPT KIAEILKDRP TWFRDCRCID VLSVIPTGNG  240
GTIELVYMQT YAPTTLAAAR DFWTLRYTTT VEDGSLVICE RSLTTSTGGP TGPPSTCFVR  300
AEMLPSGCLI RPCEGGGSIV HIVDHIDLDA WSVPEVLRPL YESSKIIAQK MTMAALRHIR  360
QIAQETSGEV QYSGGRQPAV LRALSQRLCR GFNDAVNGFA DDGWSILGSD GAEDVTIVIN  420
SSPSKILGSQ YSTLSMLPTF GGVMCAKASM LLQNVPPALL VRFLREHRSE WADYGVDAYA  480
AASLKASPYA VPCARAGGFP SSQVILPLAQ TIEHEEFLEV VRLEGHAFSP EEIALSRDMY  540
LLQLCSGVDE NAAGSCAQLV FAPIDESFGD DAPLLPSGFR VIPLDPKADG PGATRTLDLA  600
STLEVGTGGT RAPGEADTKN YNLRSVLTIA FQFTFENHYR DSVAGMARQY VRSIVGSVQR  660
VAMAIAPSRL STQLAPKTLP GSPEAVTLAR WISRSYRVHT GGELLQADSS AGDAILKQLW  720
HHSDAIMCCS VKANASAVFT FSNQAGLDML ETTLVALQDI MLDKILDEAG RKILLSEFSK  780
IMQQGFAYLP AGVCVSSMGR PVTYEQAVAW
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027087880.10.0homeobox-leucine zipper protein ATHB-14-like isoform X1
RefseqXP_027184702.10.0homeobox-leucine zipper protein ATHB-14-like
SwissprotA2XK300.0HOX32_ORYSI; Homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A068V9X70.0A0A068V9X7_COFCA; Uncharacterized protein
STRINGXP_009777911.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]