PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4916_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 580aa    MW: 63572.2 Da    PI: 5.9009
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4916_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.8e-19563357
                                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                         k  ++t+eq+e+Le++++++++ps  +r++L k++    +++ +q+kvWFqNrR +ek+
  cra_locus_4916_iso_1_len_1896_ver_3  5 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIKECpilsNIEPKQIKVWFQNRRCREKQ 63
                                         6789*****************************************************97 PP
2START165.83.1e-521533602204
                                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT CS
                                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdet 75 
                                          +aee+++e++ ka+ ++  Wv++  +++g++++ +++ s+++ g a+ra+g+v  +++   +e+l+d++ W ++
  cra_locus_4916_iso_1_len_1896_ver_3 153 VAEETLAEFLGKATGTAVDWVQMIGMKPGPDSIGIVAVSRNSIGVAARACGLVSLEPT-KIAEILKDRPTWFRD 225
                                          7899******************************************************.7777777777***** PP

                                          -SEEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSE CS
                                START  76 lakaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvv 143
                                          ++ +++l vi +g  g+++l +++++a+++l++ Rdf+++Ry+ + ++g++vi+++S++  +  p+   s  +v
  cra_locus_4916_iso_1_len_1896_ver_3 226 CRCIDVLSVIPTGngGTIELVYMQTYAPTTLAAaRDFWTLRYTTTVEDGSLVICERSLTTSTGGPTgppSTCFV 299
                                          ************************************************************999999888999** PP

                                          E-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                                START 144 RaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                                          Rae+lpSg+li+p+++g+s v++v+h+dl++++++++lr+l++s+ + ++k+++a+l++ +
  cra_locus_4916_iso_1_len_1896_ver_3 300 RAEMLPSGCLIRPCEGGGSIVHIVDHIDLDAWSVPEVLRPLYESSKIIAQKMTMAALRHIR 360
                                          *********************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.726164IPR001356Homeobox domain
SMARTSM003895.4E-16268IPR001356Homeobox domain
CDDcd000863.66E-17565No hitNo description
SuperFamilySSF466898.55E-17567IPR009057Homeodomain-like
PfamPF000461.4E-16563IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.2E-19760IPR009057Homeodomain-like
CDDcd146861.43E-65796No hitNo description
Gene3DG3DSA:1.20.5.1709.9E-461110No hitNo description
PROSITE profilePS5084825.143143371IPR002913START domain
CDDcd088751.14E-71147363No hitNo description
SMARTSM002346.4E-48152362IPR002913START domain
SuperFamilySSF559612.06E-37153364No hitNo description
PfamPF018521.6E-49153360IPR002913START domain
Gene3DG3DSA:3.30.530.201.6E-22154357IPR023393START-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MDSSKYVRYT PEQVEALERV YAECPKPSSL RRQQLIKECP ILSNIEPKQI KVWFQNRRCR  60
EKQRKEASRL QTVNRKLSAM NKLLMEENDR LQKQVSHLVY ENGYMRQQLH TVSTATTDTS  120
CESVVMTGQN QQQNPTTQHP QRDANNPAGL LTVAEETLAE FLGKATGTAV DWVQMIGMKP  180
GPDSIGIVAV SRNSIGVAAR ACGLVSLEPT KIAEILKDRP TWFRDCRCID VLSVIPTGNG  240
GTIELVYMQT YAPTTLAAAR DFWTLRYTTT VEDGSLVICE RSLTTSTGGP TGPPSTCFVR  300
AEMLPSGCLI RPCEGGGSIV HIVDHIDLDA WSVPEVLRPL YESSKIIAQK MTMAALRHIR  360
QIAQETSGEV QYSGGRQPAV LRALSQRLCR GFNDAVNGFA DDGWSILGSD GAEDVTIVIN  420
SSPSKILGSQ YSTLSMLPTF GGVMCAKASM LLQNVPPALL VRFLREHRSE WADYGVDAYA  480
AASLKASPYA VPCARAGGFP SSQVILPLAQ TIEHEEFLEV VRLEGHAFSP EEIALSRDMY  540
LLQLCSGVDE NAAGSCAQLV FAPIDESFGD DAPSRLSTQX
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. Binds to the DNA sequence 5'-GTAAT[GC]ATTAC-3'. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:17900520, ECO:0000269|PubMed:9747806}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027087880.10.0homeobox-leucine zipper protein ATHB-14-like isoform X1
RefseqXP_027184702.10.0homeobox-leucine zipper protein ATHB-14-like
SwissprotO042920.0ATBH9_ARATH; Homeobox-leucine zipper protein ATHB-9
TrEMBLA0A068V9X70.0A0A068V9X7_COFCA; Uncharacterized protein
STRINGXP_009777911.10.0(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  2. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  3. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]