PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_4883_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 220aa MW: 25304.4 Da PI: 9.6677 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92 | 2.9e-29 | 1 | 51 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvt+skRrng++KKA+EL vLCda+v++i++sst+kl+ey+s cra_locus_4883_iso_4_len_1022_ver_3 1 KRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMVSSTQKLHEYIS 51 79***********************************************86 PP | |||||||
2 | K-box | 73.6 | 5.8e-25 | 63 | 161 | 1 | 98 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLq.reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 yqk+ g++l+++++e++q +l+kLk+ ++nL+ + + G+ L++L++ +L +L +++++sl+ iR++K +++ cra_locus_4883_iso_4_len_1022_ver_3 63 YQKALGVDLWNSHYEKMQDQLKKLKDVNRNLRiERSGREWGKXLNELTYDQLGNLIEDVDNSLSAIRERKFKVI 136 7899999*************************53344668********************************** PP K-box 74 leqieelqkkekelqeenkaLrkkl 98 +qie+ +kk ++++e++++L +l cra_locus_4883_iso_4_len_1022_ver_3 137 GNQIETHKKKVRNVEEIHRNLLLEL 161 ********************98776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.5E-28 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.604 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.67E-34 | 1 | 72 | No hit | No description |
SuperFamily | SSF55455 | 1.15E-31 | 1 | 87 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-24 | 2 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-13 | 15 | 30 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-13 | 30 | 51 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.2E-12 | 74 | 160 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.441 | 76 | 167 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 220 aa Download sequence Send to blast |
KRIENQTNRQ VTYSKRRNGL FKKANELTVL CDAKVSIIMV SSTQKLHEYI SPTTSTKQLI 60 DQYQKALGVD LWNSHYEKMQ DQLKKLKDVN RNLRIERSGR EWGKXLNELT YDQLGNLIED 120 VDNSLSAIRE RKFKVIGNQI ETHKKKVRNV EEIHRNLLLE LDARQEDPHY GLVDNGGDYN 180 SVLGFPNGAP PRLLALRLQP NQPNLHSGGG SDLTTFHLLE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo). |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00077 | ChIP-seq | Transfer from AT3G54340 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027149663.1 | 1e-126 | floral homeotic protein DEFICIENS | ||||
Swissprot | P23706 | 1e-122 | DEFA_ANTMA; Floral homeotic protein DEFICIENS | ||||
TrEMBL | G3EIS3 | 1e-127 | G3EIS3_9GENT; MADS box transcription factor (Fragment) | ||||
STRING | XP_009794650.1 | 1e-117 | (Nicotiana sylvestris) |
Publications ? help Back to Top | |||
---|---|---|---|
|