PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4867_iso_7
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bZIP
Protein Properties Length: 328aa    MW: 36426 Da    PI: 9.8542
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4867_iso_7genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.24.7e-104184245
                                         XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                               bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                                         ++ k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  cra_locus_4867_iso_7_len_1851_ver_3 41 RDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRMKLTQLEQEL 84
                                         567899*************************9888888777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.1E-83787No hitNo description
SMARTSM003382.6E-740103IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4614286IPR004827Basic-leucine zipper domain
PfamPF001703.5E-74385IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.63E-74487No hitNo description
PROSITE patternPS0003604762IPR004827Basic-leucine zipper domain
PfamPF141443.7E-31127201IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MADVSPRTDT STDASTEDKS TRFQNNQGLA IAASDGSDKS RDQKTLRRLA QNREAARKSR  60
LRKKAYVQQL ESSRMKLTQL EQELQRARQQ GIFISSSGDQ AQSMSGNGAL AFDVEYARWL  120
EEHNRRINEL RGAVNSHAGD GELRIIVDGI LAHYDDIFRI KGDAAKADVF HILSGMWKTP  180
AERCFLWLGG FRSSELLKLL ANQLEPLTEQ QLLAINNLQQ SSQQAEDALS QGMEALQQSL  240
AETLAGSLGP SGSSGNVANY MGQMAMAMGK LGTLEGFIRQ ADNLRQQTLQ QMHRILTTRQ  300
SARALLAIND YFSRLRALSS LWLARPRG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00492DAPTransfer from AT5G06950Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027078869.10.0transcription factor TGA2.2-like isoform X2
RefseqXP_027161661.10.0transcription factor TGA2.2-like
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A068UNV80.0A0A068UNV8_COFCA; Uncharacterized protein
STRINGMigut.F00128.1.p0.0(Erythranthe guttata)