PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_4867_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 102aa MW: 11701.2 Da PI: 11.1502

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_4867_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.3	1.2e-11	41	86	2	51
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 ++ k rr+++NReAAr+sR+RKka++++Le +L++ ++L ++ cra_locus_4867_iso_4_len_862_ver_3 41 RDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRMKLTQLEQEL----QR 86 567899*************************9999998877644....44 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.4E-10	37	89	No hit	No description
SMART	SM00338	1.7E-5	40	102	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.5E-8	42	85	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.461	42	86	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.06E-8	44	90	No hit	No description
PROSITE pattern	PS00036	0	47	62	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009410	Biological Process	response to xenobiotic stimulus
GO:0009627	Biological Process	systemic acquired resistance
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
MADVSPRTDT STDASTEDKS TRFQNNQGLA IAASDGSDKS RDQKTLRRLA QNREAARKSR 60 LRKKAYVQQL ESSRMKLTQL EQELQRARQQ VCFNKLLMRI LS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00492	DAP	Transfer from AT5G06950	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027078869.1	2e-52	transcription factor TGA2.2-like isoform X2
Refseq	XP_027161661.1	2e-52	transcription factor TGA2.2-like
Swissprot	Q41558	4e-33	HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBL	A0A068UNV8	1e-51	A0A068UNV8_COFCA; Uncharacterized protein
STRING	Migut.F00128.1.p	3e-45	(Erythranthe guttata)