PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_48576_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NF-YB | ||||||||
Protein Properties | Length: 106aa MW: 12262.4 Da PI: 5.1694 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 54.3 | 3.2e-17 | 2 | 41 | 58 | 97 |
NF-YB 58 krktingddllwalatlGfedyveplkvylkkyrelegek 97 +rkt+ngdd++wal+tlGf+dy plk yl++yre+egek cra_locus_48576_iso_1_len_348_ver_3 2 RRKTVNGDDICWALGTLGFDDYSLPLKRYLNRYREIEGEK 41 79***********************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.1E-15 | 2 | 61 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.45E-11 | 2 | 67 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
XRRKTVNGDD ICWALGTLGF DDYSLPLKRY LNRYREIEGE KLANNNQDRV ISEETEPTNQ 60 AEASTSGRFE AIDLQEIFRA SPTDIANLSS VLKWHLLQYH VKFWPA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010259679.1 | 5e-22 | PREDICTED: nuclear transcription factor Y subunit B-5-like | ||||
TrEMBL | A0A1U8A0J5 | 1e-20 | A0A1U8A0J5_NELNU; nuclear transcription factor Y subunit B-5-like | ||||
STRING | XP_010259679.1 | 2e-21 | (Nelumbo nucifera) |