PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_47931_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | G2-like | ||||||||
Protein Properties | Length: 141aa MW: 16744.3 Da PI: 9.5171 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96 | 2.9e-30 | 5 | 58 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +r+rWt+eLH++F+e v+ LGG++kAtPk il+lmk +gLt+ h+kSHLQkYR+ cra_locus_47931_iso_2_len_596_ver_3 5 KRMRWTQELHNQFLESVRLLGGPKKATPKGILKLMKCEGLTIFHIKSHLQKYRV 58 7****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.898 | 1 | 61 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-27 | 2 | 59 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.7E-17 | 3 | 59 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.6E-24 | 5 | 59 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-8 | 6 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.2E-15 | 88 | 130 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MEKRKRMRWT QELHNQFLES VRLLGGPKKA TPKGILKLMK CEGLTIFHIK SHLQKYRVTQ 60 YVPESKQEDN TENTQRSSIT ELDQEMSMQI VEALKMQIDV QKRLYEQLQC QKNLQSRIEE 120 QAQQLKKMFD CRVETNTENA S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 9e-25 | 4 | 61 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-25 | 4 | 61 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-25 | 4 | 61 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-25 | 4 | 61 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022896540.1 | 4e-51 | myb family transcription factor PHL5-like | ||||
Swissprot | Q9SJW0 | 9e-44 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A1U8ASR3 | 6e-48 | A0A1U8ASR3_NELNU; myb family transcription factor PHL5-like | ||||
STRING | XP_010265860.1 | 1e-48 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16717 | 4 | 5 |