PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4787_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 695aa    MW: 76448.9 Da    PI: 8.7705
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4787_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07596645147
                                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
                      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                                          r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  cra_locus_4787_iso_1_len_2989_ver_3 596 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 645
                                          678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542363.88E-7396470IPR029071Ubiquitin-related domain
CDDcd017690.00175405471No hitNo description
PROSITE profilePS5129415.285591650IPR017930Myb domain
SMARTSM007171.2E-7595648IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-10596646IPR009057Homeodomain-like
SuperFamilySSF466891.26E-15597678IPR009057Homeodomain-like
CDDcd116601.00E-16597647No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MVLQNRLDYG FNGYQVPPTP RAARSARKRG IYRRKVDDSQ MCAFDLLATI AGKLLTEGGT  60
SPSSVDMGSG KEKSEAVKDS YKEDQHEEDK HPNAKFCKED TCGRSFIVSE LVLQAPILNN  120
GSKELPPTQN DVCSGPASGI TSSESSEKVG SDEHLANDEI KAGTGHCSGK ADIELFGCRL  180
SPGCKLEDES KKQIKVEPND LKLSISTRDD VCNSDCAVAW DQKPYTLGSS DDSVKFSQTR  240
DSISCGSLPF NRENVKLVTR DDDEKSAGCL QSSTRNKAFR LSPHTGDRKI RKFLVSKYWK  300
VPNLKDDEHL KTDADAKHAY QNAKNGNKRQ RSQRDYPFKK RKLYGCTSVS NSDGGISSDE  360
TCKSPRKGSA GDSSDSMLPR VTAISSSAAG EHSSLHSKNS PVKLKIKSFR VPEFFIEIPE  420
TATVGSLKKT VMEAVTAILS GGLHVGVLLQ GKKIRDDNKT LLQSGISHDN KPDALGFTLE  480
PNTSQSPHCL NPEDHPFLLP CDAPEPLSRY PPVSVTNHNA VHRGTSDASA DPPGTNLSNF  540
IESDHDSAPS PPDMSLEKST VDSRALVAVP AMNVGPLTVV PMRKSKRSEA AQRRIRRPFS  600
VSEVEALVQA VEKLGTGRWR DVKLRAFDNA KHRTYVDLKD KWKTLVHTAR ISPQQRRGEP  660
VPQELLDRVL TAHAYWSQQQ VKQQFKQPTE ACRLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-555836864107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1327342KRQRSQRDYPFKKRKL
2332341QRDYPFKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027088551.10.0telomere repeat-binding protein 1-like
TrEMBLA0A068UL860.0A0A068UL86_COFCA; Uncharacterized protein
STRINGVIT_06s0004g04940.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348