PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_476_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 723aa MW: 80014 Da PI: 8.7756 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28 | 3.8e-09 | 335 | 372 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + cra_locus_476_iso_1_len_3379_ver_3 335 FEHflHPYPKDSDKLMLAKQTGLTRSQVSNWFINARVR 372 554459******************************88 PP | |||||||
2 | BELL | 118.8 | 2.5e-38 | 192 | 263 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+++l+eV++rY+qy++q+++vis Fe++ag+gsak Yt+lAl++iS++FrcLkdai +qi cra_locus_476_iso_1_len_3379_ver_3 192 ERQEIQMKKAKLVNMLDEVEQRYRQYHHQMHIVISWFEQAAGIGSAKTYTALALQTISKQFRCLKDAILGQI 263 79********************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 5.5E-61 | 108 | 261 | IPR006563 | POX domain |
Pfam | PF07526 | 1.3E-48 | 113 | 259 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.147 | 313 | 376 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.86E-11 | 316 | 376 | No hit | No description |
SMART | SM00389 | 2.3E-9 | 316 | 380 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-17 | 317 | 383 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-28 | 319 | 383 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.6E-18 | 333 | 372 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009610 | Biological Process | response to symbiotic fungus | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010201 | Biological Process | response to continuous far red light stimulus by the high-irradiance response system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 723 aa Download sequence Send to blast |
XSHHHHHHHH DQQDISGLHA FLPRVHYNLY SPSIDLGAAR EVSRVQQGLS LSLSSQQPPA 60 YVSFRAEREV PSQPVMTTTI SPTSCGEEMR LSGGSSSSAS GISNGVNNGM QSVLLSSKYL 120 KAAQELLDEV VNVGKGVKNG GNHENGKVSK EIGESSDMGA ANNNSSGELL GQQIGGKESS 180 NSKRGSELTT AERQEIQMKK AKLVNMLDEV EQRYRQYHHQ MHIVISWFEQ AAGIGSAKTY 240 TALALQTISK QFRCLKDAIL GQIRAASKSL GEEDGSLFGK VEGGSSSSAS RLKFVDNQLR 300 QQRALQQLGM IQHNAWRPQR GLPERSVSVL RAWLFEHFLH PYPKDSDKLM LAKQTGLTRS 360 QVSNWFINAR VRLWKPMVEE MYMEEMKENE KNGLAEEKTS KSEQNEDSAS RSTAPLDKTS 420 TLENQNNNIT TPISMSPPTT ASPTGIQQQI QNHSGGFNLI GSPELDNITQ GSPKKPRSTD 480 NNMLHSPTSV PSINNMDAKT NDSNNEQLTI NFGSERQSRE GFSLLGAPTN FIGGFGTYPI 540 GELGRFSAEQ FPASYAGNGV SLTLGLPHCE NLSISGTHQT FLPNQNMQLG RGVEIGDTNE 600 YGSINTPTST HSTSVYENLN IQNRKRFAAQ LLPDFEHFFR KDMPAFAWPP WNGNTTLQMP 660 PSDQDTAHAH LPAILSKCLL DHRRAKLELV KQKLTPKIAK TRHQFLFXHL AHHQRWQHPS 720 KVS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 9e-16 | 322 | 380 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 9e-16 | 322 | 380 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027176216.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_027176217.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_027176218.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_027176219.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_027176220.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 1e-160 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A068UQ86 | 0.0 | A0A068UQ86_COFCA; Uncharacterized protein | ||||
STRING | XP_009787672.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1478 | 24 | 67 |
Publications ? help Back to Top | |||
---|---|---|---|
|