PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4701_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 368aa    MW: 39688.4 Da    PI: 4.2895
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4701_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19119167254
                                  AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                                          +ykGVr++k +g+W+AeIrd +     + kr++lg++ ++eeA ka++  r+++e
  cra_locus_4701_iso_1_len_1976_ver_3 119 KYKGVRQRK-WGKWAAEIRDpF-----QgKRIWLGTYNSPEEASKAYELKRLEFE 167
                                          8*******9.**********55.....45**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.31E-22118159No hitNo description
SuperFamilySSF541711.11E-16119166IPR016177DNA-binding domain
PfamPF008472.4E-13119168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-20119165IPR001471AP2/ERF domain
SMARTSM003809.1E-17119173IPR001471AP2/ERF domain
PROSITE profilePS5103218.927119182IPR001471AP2/ERF domain
PRINTSPR003679.5E-9120131IPR001471AP2/ERF domain
PRINTSPR003679.5E-9142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MPEPRRERPL SQESIGKRLK MMAESTKGVR RIRVICNDPD ATDSSDDEGI VERKPKRFVR  60
VVSIPNGFLK SLPVATTETE NSSQDSNNGV KSSKKPSGGL AKTPSQPSLA AVKPSSGAKY  120
KGVRQRKWGK WAAEIRDPFQ GKRIWLGTYN SPEEASKAYE LKRLEFEAMA IEKAPKKSSN  180
ENAADDNQSC SVVVSQPQKQ SPSISEDSAE SPLSQTSPAS VLEMDCLTSS ASASAAAHAP  240
AAADVAGDKV NEVALEASVV EQKVPDLDLI MDDDVLAQIG LGMDLDLELD SLNLDGLVQP  300
PEDFVIGDLE DIPLFGFDDD EHNALPDFDF DFDFAACSEA LDWMNDAPVM NEAPPLLNGA  360
APLNIACP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027100117.11e-110ethylene-responsive transcription factor ERF118-like
TrEMBLA0A068TZ381e-107A0A068TZ38_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29572351