PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_46963_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

YABBY

Protein Properties

Length: 75aa MW: 8351.48 Da PI: 7.8498

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_46963_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	92.5	1e-28	3	69	5	70
YABBY 5 ssseqvCyvqCnfCntilavsvPst.slfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee 70 +se+vCyv+CnfCntilavsvP + s++ +vtvrCGhC++llsvn+ + l+ ++hl+++++++ cra_locus_46963_iso_2_len_335_ver_3 3 ITSERVCYVHCNFCNTILAVSVPCSsSMLAIVTVRCGHCSNLLSVNVGALLHHLPLQHHLQQKMQKQ 69 589******************7526899****************************9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	9.8E-28	4	70	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 75 aa Download sequence Send to blast
MDITSERVCY VHCNFCNTIL AVSVPCSSSM LAIVTVRCGH CSNLLSVNVG ALLHHLPLQH 60 HLQQKMQKQD ESNKX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027164904.1	2e-31	putative axial regulator YABBY 2 isoform X3
Swissprot	Q10FZ7	4e-22	YAB2_ORYSJ; Protein YABBY 2
TrEMBL	A0A068V4S5	7e-27	A0A068V4S5_COFCA; Uncharacterized protein
STRING	VIT_06s0009g00880.t01	3e-26	(Vitis vinifera)
STRING	XP_009792033.1	3e-26	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163