PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_4695_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NF-YC | ||||||||
Protein Properties | Length: 279aa MW: 30920 Da PI: 4.6077 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 62 | 1.2e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + +t++ ++++v++ +++dfl cra_locus_4695_iso_2_len_2434_ver_3 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLRRGAKTVNSLHLKQCVQSYNVYDFLR 81 5789************************************************************************ PP NF-YC 94 divpr 98 div r cra_locus_4695_iso_2_len_2434_ver_3 82 DIVSR 86 **987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.4E-26 | 3 | 72 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.37E-20 | 4 | 88 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.2E-20 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITLRRGAK 60 TVNSLHLKQC VQSYNVYDFL RDIVSRVPDL GGSEGAGDGT AHRKRKVTME EDNDSDDEYK 120 KSHLLEAGHT SGRGRGRGRG RGRGRGSRAL QKESSSHHGR FEDDPDISEQ ANEEKDINSE 180 ILDNGASEKD SKETLVAKNP DVPAQNFDLN MDLNENTDTT AVTAGVTSST TPAKPSAETK 240 QEEYPGWSLA EMEQMAIDPV QLANMNQGDE EEEDYDEEG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 4e-23 | 2 | 72 | 5 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 144 | RGRGRGRGRGR |
2 | 136 | 145 | RGRGRGRGRG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027179024.1 | 1e-127 | dr1-associated corepressor-like isoform X1 | ||||
Refseq | XP_027179032.1 | 1e-127 | dr1-associated corepressor-like isoform X1 | ||||
Refseq | XP_027179037.1 | 1e-127 | dr1-associated corepressor-like isoform X1 | ||||
TrEMBL | A0A068UMH5 | 1e-124 | A0A068UMH5_COFCA; Uncharacterized protein | ||||
STRING | XP_009797323.1 | 7e-97 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7555 | 20 | 29 |