PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_4641_iso_8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | YABBY | ||||||||
Protein Properties | Length: 234aa MW: 25903.1 Da PI: 7.9361 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 228.2 | 2.2e-70 | 27 | 191 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkvee 79 seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll vn++ a + +++++l + ++ + cra_locus_4641_iso_8_len_2756_ver_3 27 PSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLLPSANQLNFGHNLFSTHPHNFLEQI 100 68****************************************88776665555555566777777778888888 PP YABBY 80 enlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreaf 153 +n + n +++++++ + + + +++pr+p +rPPekrqr+Psaynrfikeeiqrika+nPdishreaf cra_locus_4641_iso_8_len_2756_ver_3 101 SNPTPNFLMNHHQTSATDFNLAAQPGFDDLPRPPVLNRPPEKRQRIPSAYNRFIKEEIQRIKAGNPDISHREAF 174 888889999999988888877788999*****999*************************************** PP YABBY 154 saaaknWahfPkihfgl 170 saaaknWahfP+i fgl cra_locus_4641_iso_8_len_2756_ver_3 175 SAAAKNWAHFPHIQFGL 191 ***************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.8E-69 | 27 | 191 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 9.69E-8 | 136 | 185 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.1E-4 | 139 | 185 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0033014 | Biological Process | tetrapyrrole biosynthetic process | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0008483 | Molecular Function | transaminase activity | ||||
GO:0030170 | Molecular Function | pyridoxal phosphate binding | ||||
GO:0042286 | Molecular Function | glutamate-1-semialdehyde 2,1-aminomutase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MSSSSSSSNS NSNSSTSLSL DHLTPPPSEQ LCYVHCNICD TVLAVSVPCT SLFKTVTVRC 60 GHCTNLLPVN MRGLLLPSAN QLNFGHNLFS THPHNFLEQI SNPTPNFLMN HHQTSATDFN 120 LAAQPGFDDL PRPPVLNRPP EKRQRIPSAY NRFIKEEIQR IKAGNPDISH REAFSAAAKN 180 WAHFPHIQFG LMPDHQTHVK KNNNVIRQQD GGEDHVLMKD GGFFATANVG VSPY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6, PubMed:19837869). Required during flower formation and development, particularly for the patterning of floral organs. Positive regulator of class B (AP3 and PI) activity in whorls 2 and 3. Negative regulator of class B activity in whorl 1 and of SUP activity in whorl 3. Interacts with class A proteins (AP1, AP2 and LUG) to repress class C (AG) activity in whorls 1 and 2. Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity. In vitro, can compete and displace the AP1 protein binding to DNA containing CArG box (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6). {ECO:0000269|PubMed:10323860, ECO:0000269|PubMed:10331982, ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:11812777, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869, ECO:0000269|PubMed:9878633, ECO:0000269|Ref.3, ECO:0000269|Ref.6}. | |||||
UniProt | Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002266233.1 | 1e-118 | PREDICTED: protein YABBY 4 | ||||
Swissprot | A2X7Q3 | 5e-76 | YAB4_ORYSI; Protein YABBY 4 | ||||
Swissprot | O22152 | 2e-76 | YAB1_ARATH; Axial regulator YABBY 1 | ||||
Swissprot | Q6H668 | 5e-76 | YAB4_ORYSJ; Protein YABBY 4 | ||||
TrEMBL | A0A438K3E8 | 1e-116 | A0A438K3E8_VITVI; Axial regulator YABBY 1 | ||||
TrEMBL | D7TN10 | 1e-116 | D7TN10_VITVI; Uncharacterized protein | ||||
STRING | VIT_02s0154g00070.t01 | 1e-117 | (Vitis vinifera) |