PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4548_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 295aa    MW: 33035.4 Da    PI: 8.2101
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4548_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.2e-093985454
                                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                  HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                                          +  rE++RRd++N +f+eL ++l  +    + K++K +i  +A++ +k+L
  cra_locus_4548_iso_5_len_1988_ver_3 39 LKADREKKRRDKLNGSFQELGDILDVD----GHKNNKRDIIVEAIHVLKDL 85
                                         5778********************998....99***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.6013585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.54E-73789No hitNo description
SuperFamilySSF474592.22E-1037104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-73885IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-44191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-1041106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MFGLXKDFML SSYLFLWGSI CRSQDAVEKK KDETIAKRLK ADREKKRRDK LNGSFQELGD  60
ILDVDGHKNN KRDIIVEAIH VLKDLTSELN RQKVQHAALT EESRELMEEK NELKSEKASL  120
KSEIENLELL FQHSLSFMHQ WAAPVDPSVS YPIALLAPSR PVRIGSPRPS PQMTHVVPSI  180
GRPYTSVASA SNNPGQQNPE QNPSNCEGYE VVNVGSRLHE LELMPGSITK KFSAKKKASN  240
QWCTMEALKI GALYASPLPP DVSLAAVPTG CMVTYYEKLN LSSRAQSSNC WSLEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12847KKKDETIAKRLKADREKKRR
24449KKRRDK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC7SBB61e-162C7SBB6_CATRO; BHLH transcription factor MYC3