PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_4548_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 50aa MW: 5818.7 Da PI: 10.8711 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.6 | 2.2e-08 | 17 | 43 | 3 | 29 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC CS HLH 3 rahnerErrRRdriNsafeeLrellPk 29 r + rE++RRd++N +f+eL ++l k cra_locus_4548_iso_4_len_301_ver_3 17 RLKADREKKRRDKLNGSFQELGDILGK 43 55789*****************99966 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.06E-5 | 15 | 44 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.1E-6 | 17 | 43 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.9E-5 | 21 | 43 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 50 aa Download sequence Send to blast |
RSQDAVEKKK DETIAKRLKA DREKKRRDKL NGSFQELGDI LGKMLHPSPR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 7 | 26 | KKKDETIAKRLKADREKKRR |
2 | 23 | 28 | KKRRDK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | C7SBB6 | 2e-17 | C7SBB6_CATRO; BHLH transcription factor MYC3 |