PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_4515_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 296aa MW: 32874.8 Da PI: 6.8726 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 313.9 | 5.2e-96 | 10 | 296 | 27 | 301 |
GAGA_bind 27 qlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla..salpvg 98 m++ aerda+irern+al e+k a+aerdma lqrd+a++ern+a+ erd+++ al+ +e s++ +++++g cra_locus_4515_iso_3_len_1517_ver_3 10 TYMAITAERDAAIRERNMALEERKRAFAERDMAMLQRDAAISERNAAIQERDEAISALQIRESSMNtlFHDSPG 83 4589999********************************************************999999999** PP GAGA_bind 99 vqvlsgtksidslqqlse..pqledsavelreeeklealpieeaaeeakekkk......kkkrqrakkpkekka 164 +v +g+k i+ qq+s+ d ++ + ++++++ ++e ++e + +k +k++++ak+p++ k+ cra_locus_4515_iso_3_len_1517_ver_3 84 DGVGDGAKDIHYEQQISDpvA---DISFSPGDISTSDSFYLTEPPPEDVKPEKvrkprgSKSTKSAKTPRVGKR 154 ***********9999877442...44444344444444444444444443333000000333344444443333 PP GAGA_bind 165 k...kkkkksekskkkvkkesader.........skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWG 226 k +k+ ++ ++ ++ + +l+ln++++Des++PvPvCsCtG+++ CYkWG cra_locus_4515_iso_3_len_1517_ver_3 155 KaegLNKQVDSAASNS--------LieesdddldKQLVTWKDNLGLNQINFDESAMPVPVCSCTGTPQPCYKWG 220 3221122222222222........1223344443444444569******************************* PP GAGA_bind 227 nGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydl.snpvDLkdhWAkHGtnkfvt 299 nGGWqSaCCtttiS+yPLP+++++r +R++grKmS++af+klL++LaaeG+d+ s p+DLkdhWAkHGtn++ t cra_locus_4515_iso_3_len_1517_ver_3 221 NGGWQSACCTTTISMYPLPQVSNKRYTRVGGRKMSGSAFSKLLNRLAAEGHDFySAPLDLKDHWAKHGTNRYST 294 ****************************************************8799****************99 PP GAGA_bind 300 ir 301 ++ cra_locus_4515_iso_3_len_1517_ver_3 295 LK 296 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 1.6E-106 | 1 | 296 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 4.8E-82 | 9 | 296 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MDHNHLTIKT YMAITAERDA AIRERNMALE ERKRAFAERD MAMLQRDAAI SERNAAIQER 60 DEAISALQIR ESSMNTLFHD SPGDGVGDGA KDIHYEQQIS DPVADISFSP GDISTSDSFY 120 LTEPPPEDVK PEKVRKPRGS KSTKSAKTPR VGKRKAEGLN KQVDSAASNS LIEESDDDLD 180 KQLVTWKDNL GLNQINFDES AMPVPVCSCT GTPQPCYKWG NGGWQSACCT TTISMYPLPQ 240 VSNKRYTRVG GRKMSGSAFS KLLNRLAAEG HDFYSAPLDL KDHWAKHGTN RYSTLK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027074875.1 | 1e-159 | protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_027078453.1 | 1e-159 | protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_027178743.1 | 1e-159 | protein BASIC PENTACYSTEINE6-like | ||||
Swissprot | Q8L999 | 2e-87 | BPC6_ARATH; Protein BASIC PENTACYSTEINE6 | ||||
TrEMBL | A0A068U164 | 1e-156 | A0A068U164_COFCA; Uncharacterized protein | ||||
STRING | XP_009789611.1 | 1e-142 | (Nicotiana sylvestris) |