PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_4515_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

BBR-BPC

Protein Properties

Length: 296aa MW: 32874.8 Da PI: 6.8726

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_4515_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	313.9	5.2e-96	10	296	27	301
GAGA_bind 27 qlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla..salpvg 98 m++ aerda+irern+al e+k a+aerdma lqrd+a++ern+a+ erd+++ al+ +e s++ +++++g cra_locus_4515_iso_1_len_1516_ver_3 10 TYMAITAERDAAIRERNMALEERKRAFAERDMAMLQRDAAISERNAAIQERDEAISALQIRESSMNtlFHDSPG 83 4589999******************************************************999999999 PP GAGA_bind 99 vqvlsgtksidslqqlse..pqledsavelreeeklealpieeaaeeakekkk......kkkrqrakkpkekka 164 +v +g+k i+ qq+s+ d ++ + ++++++ ++e ++e + +k +k++++ak+p++ k+ cra_locus_4515_iso_1_len_1516_ver_3 84 DGVGDGAKDIHYEQQISDpvA---DISFSPGDISTSDSFYLTEPPPEDVKPEKvrkprgSKSTKSAKTPRVGKR 154 *********9999877442...44444344444444444444444443333000000333344444443333 PP GAGA_bind 165 k...kkkkksekskkkvkkesader.........skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWG 226 k +k+ ++ ++ ++ + +l+ln++++Des++PvPvCsCtG+++ CYkWG cra_locus_4515_iso_1_len_1516_ver_3 155 KaegLNKQVDSAASNS--------LieesdddldKQLVTWKDNLGLNQINFDESAMPVPVCSCTGTPQPCYKWG 220 3221122222222222........1223344443444444569*************************** PP GAGA_bind 227 nGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydl.snpvDLkdhWAkHGtnkfvt 299 nGGWqSaCCtttiS+yPLP+++++r +R++grKmS++af+klL++LaaeG+d+ s p+DLkdhWAkHGtn++ t cra_locus_4515_iso_1_len_1516_ver_3 221 NGGWQSACCTTTISMYPLPQVSNKRYTRVGGRKMSGSAFSKLLNRLAAEGHDFySAPLDLKDHWAKHGTNRYST 294 ************************************************8799**************99 PP GAGA_bind 300 ir 301 ++ cra_locus_4515_iso_1_len_1516_ver_3 295 LK 296 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.6E-106	1	296	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	4.8E-82	9	296	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MDHNHLTIKT YMAITAERDA AIRERNMALE ERKRAFAERD MAMLQRDAAI SERNAAIQER 60 DEAISALQIR ESSMNTLFHD SPGDGVGDGA KDIHYEQQIS DPVADISFSP GDISTSDSFY 120 LTEPPPEDVK PEKVRKPRGS KSTKSAKTPR VGKRKAEGLN KQVDSAASNS LIEESDDDLD 180 KQLVTWKDNL GLNQINFDES AMPVPVCSCT GTPQPCYKWG NGGWQSACCT TTISMYPLPQ 240 VSNKRYTRVG GRKMSGSAFS KLLNRLAAEG HDFYSAPLDL KDHWAKHGTN RYSTLK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027074875.1	1e-159	protein BASIC PENTACYSTEINE6-like
Refseq	XP_027078453.1	1e-159	protein BASIC PENTACYSTEINE6-like
Refseq	XP_027178743.1	1e-159	protein BASIC PENTACYSTEINE6-like
Swissprot	Q8L999	2e-87	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	A0A068U164	1e-156	A0A068U164_COFCA; Uncharacterized protein
STRING	XP_009789611.1	1e-142	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8062	22	30