PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_4511_iso_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | G2-like | ||||||||
Protein Properties | Length: 482aa MW: 53448.4 Da PI: 5.1882 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105 | 4.3e-33 | 259 | 313 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe Fveav++LGGse+AtPk +l+lm+ +gLt++hvkSHLQkYR+ cra_locus_4511_iso_5_len_2205_ver_3 259 KPRMRWTPELHEIFVEAVNKLGGSERATPKGVLKLMNKEGLTIYHVKSHLQKYRT 313 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.97E-17 | 256 | 313 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.427 | 256 | 316 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-30 | 258 | 315 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.3E-24 | 259 | 313 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.8E-11 | 261 | 312 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.7E-23 | 344 | 390 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MDAQSSLFIR RTNEATLSNM GASGATSTSL PNLPSPLAEK YPKLPDSLQV TSEPELTTNS 60 LSSLPAPLSS RSETVGHQFS STSGFPKDLK YPSFSSQNGR SQNYPFLSQS RTEEASLETG 120 PFAGVQSKQL NSCHLGNNNI PWSTEAVQDF PDFSRNIPVQ NDQVESLSGV MVSEDHVKKN 180 DWHDWADQLI SVDDPIDSNW SDLLVDVNVP DPDSKLLQLS PVLPVLEPQP QSQPHNQNPL 240 PSGQICPVSS PSSAATLAKP RMRWTPELHE IFVEAVNKLG GSERATPKGV LKLMNKEGLT 300 IYHVKSHLQK YRTARYKPEP SEGTSEKKSN TVAEMTSLDF KTTMGITEAL RLQMEVQKQL 360 HEQLEIQRNL QLRIEEQGKY IQMMFEKHRK MEEDKSKTPG PSSDEPSLSP AKTDSKINEQ 420 SESKEQDKSA KESSSSDACP REKYTEESPS KEQKTPERKS CEDQDQDGSV PPAKRAKAGE 480 SL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-29 | 258 | 317 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-29 | 258 | 317 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-29 | 258 | 317 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-29 | 258 | 317 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-29 | 258 | 317 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-29 | 258 | 317 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-29 | 258 | 317 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-29 | 258 | 317 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027088350.1 | 0.0 | protein PHR1-LIKE 1-like isoform X2 | ||||
Swissprot | Q8GUN5 | 1e-95 | PHL1_ARATH; Protein PHR1-LIKE 1 | ||||
TrEMBL | A0A068U7Z0 | 0.0 | A0A068U7Z0_COFCA; Uncharacterized protein | ||||
STRING | XP_009775047.1 | 1e-156 | (Nicotiana sylvestris) |
Publications ? help Back to Top | |||
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