PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_4511_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

G2-like

Protein Properties

Length: 482aa MW: 53448.4 Da PI: 5.1882

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_4511_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105	4.3e-33	259	313	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe Fveav++LGGse+AtPk +l+lm+ +gLt++hvkSHLQkYR+ cra_locus_4511_iso_3_len_2085_ver_3 259 KPRMRWTPELHEIFVEAVNKLGGSERATPKGVLKLMNKEGLTIYHVKSHLQKYRT 313 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.97E-17	256	313	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.427	256	316	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-30	258	315	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.3E-24	259	313	IPR006447	Myb domain, plants
Pfam	PF00249	6.8E-11	261	312	IPR001005	SANT/Myb domain
Pfam	PF14379	3.7E-23	344	390	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MDAQSSLFIR RTNEATLSNM GASGATSTSL PNLPSPLAEK YPKLPDSLQV TSEPELTTNS 60 LSSLPAPLSS RSETVGHQFS STSGFPKDLK YPSFSSQNGR SQNYPFLSQS RTEEASLETG 120 PFAGVQSKQL NSCHLGNNNI PWSTEAVQDF PDFSRNIPVQ NDQVESLSGV MVSEDHVKKN 180 DWHDWADQLI SVDDPIDSNW SDLLVDVNVP DPDSKLLQLS PVLPVLEPQP QSQPHNQNPL 240 PSGQICPVSS PSSAATLAKP RMRWTPELHE IFVEAVNKLG GSERATPKGV LKLMNKEGLT 300 IYHVKSHLQK YRTARYKPEP SEGTSEKKSN TVAEMTSLDF KTTMGITEAL RLQMEVQKQL 360 HEQLEIQRNL QLRIEEQGKY IQMMFEKHRK MEEDKSKTPG PSSDEPSLSP AKTDSKINEQ 420 SESKEQDKSA KESSSSDACP REKYTEESPS KEQKTPERKS CEDQDQDGSV PPAKRAKAGE 480 SL

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MDAQSSLFIR RTNEATLSNM GASGATSTSL PNLPSPLAEK YPKLPDSLQV TSEPELTTNS  60
LSSLPAPLSS RSETVGHQFS STSGFPKDLK YPSFSSQNGR SQNYPFLSQS RTEEASLETG  120
PFAGVQSKQL NSCHLGNNNI PWSTEAVQDF PDFSRNIPVQ NDQVESLSGV MVSEDHVKKN  180
DWHDWADQLI SVDDPIDSNW SDLLVDVNVP DPDSKLLQLS PVLPVLEPQP QSQPHNQNPL  240
PSGQICPVSS PSSAATLAKP RMRWTPELHE IFVEAVNKLG GSERATPKGV LKLMNKEGLT  300
IYHVKSHLQK YRTARYKPEP SEGTSEKKSN TVAEMTSLDF KTTMGITEAL RLQMEVQKQL  360
HEQLEIQRNL QLRIEEQGKY IQMMFEKHRK MEEDKSKTPG PSSDEPSLSP AKTDSKINEQ  420
SESKEQDKSA KESSSSDACP REKYTEESPS KEQKTPERKS CEDQDQDGSV PPAKRAKAGE  480
SL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-29	258	317	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-29	258	317	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-29	258	317	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-29	258	317	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-29	258	317	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-29	258	317	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-29	258	317	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-29	258	317	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269\|PubMed:20838596, ECO:0000269\|PubMed:23788639}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027088350.1	0.0	protein PHR1-LIKE 1-like isoform X2
Swissprot	Q8GUN5	1e-95	PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBL	A0A068U7Z0	0.0	A0A068U7Z0_COFCA; Uncharacterized protein
STRING	XP_009775047.1	1e-156	(Nicotiana sylvestris)

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Bonnot C, et al. A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana. New Phytol., 2016. 209(1): p. 161-76 [PMID:26243630] Aleksza D,Horváth GV,Sándor G,Szabados L Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation. Plant Physiol., 2017. 175(1): p. 555-567 [PMID:28765275]