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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | cra_locus_4511_iso_2 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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| Family | G2-like | ||||||||
| Protein Properties | Length: 297aa MW: 33388.5 Da PI: 6.5242 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 94.3 | 9.6e-30 | 44 | 94 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51
kpr+rWtpeLHe Fveav++LGGse+AtPk +l+lm+ +gLt++hvkSHLQ
cra_locus_4511_iso_2_len_1161_ver_3 44 KPRMRWTPELHEIFVEAVNKLGGSERATPKGVLKLMNKEGLTIYHVKSHLQ 94
79************************************************* PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF46689 | 5.73E-15 | 41 | 94 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 2.6E-26 | 43 | 94 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 1.1E-21 | 44 | 95 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 1.2E-9 | 46 | 94 | IPR001005 | SANT/Myb domain |
| Pfam | PF14379 | 1.8E-23 | 159 | 205 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 297 aa Download sequence Send to blast |
LLQLSPVLPV LEPQPQSQPH NQNPLPSGQI CPVSSPSSAA TLAKPRMRWT PELHEIFVEA 60 VNKLGGSERA TPKGVLKLMN KEGLTIYHVK SHLQVQGVVP IDDCFLXFVC ELSPFNQFTV 120 VMFQKYRTAR YKPEPSEGTS EKKSNTVAEM TSLDFKTTMG ITEALRLQME VQKQLHEQLE 180 IQRNLQLRIE EQGKYIQMMF EKHRKMEEDK SKTPGPSSDE PSLSPAKTDS KINEQSESKE 240 QDKSAKESSS SDACPREKYT EESPSKEQKT PERKSCEDQD QDGSVPPAKR AKAGESL |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j4k_A | 7e-24 | 43 | 94 | 1 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 7e-24 | 43 | 94 | 1 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 7e-24 | 43 | 94 | 1 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 7e-24 | 43 | 94 | 1 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 7e-24 | 43 | 94 | 1 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 7e-24 | 43 | 94 | 1 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 7e-24 | 43 | 94 | 1 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 7e-24 | 43 | 94 | 1 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcription factor involved in phosphate starvation signaling (PubMed:11511543, PubMed:17927693, PubMed:26586833). Binds as a dimer to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:11511543, PubMed:20838596, PubMed:26586833). SPX1 is a competitive inhibitor of this DNA-binding (PubMed:25271326). PHR1 binding to its targets is low Pi-dependent (PubMed:25271326). Regulates the expression of miR399 (PubMed:20838596). Regulates the expression of IPS1 (At3g09922), a non-coding RNA that mimics the target of miR399 to block the cleavage of PHO2 under Pi-deficient conditions (PubMed:17643101). Regulates lipid remodeling and triacylglycerol accumulation during phosphorus starvation (PubMed:25680792). Required for the shoot-specific hypoxic response (PubMed:24753539). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). Contributes to the homeostasis of both sulfate and phosphate in plants under phosphate deficiency (PubMed:21261953). Required for adaptation to high light and retaining functional photosynthesis during phosphate starvation (PubMed:21910737). Involved in the coregulation of Zn and Pi homeostasis (PubMed:24420568). {ECO:0000269|PubMed:11511543, ECO:0000269|PubMed:17643101, ECO:0000269|PubMed:17927693, ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:21261953, ECO:0000269|PubMed:21910737, ECO:0000269|PubMed:23788639, ECO:0000269|PubMed:24420568, ECO:0000269|PubMed:24753539, ECO:0000269|PubMed:25271326, ECO:0000269|PubMed:25680792, ECO:0000269|PubMed:26586833}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Only moderately up-regulated by Pi starvation. {ECO:0000269|PubMed:11511543}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_027088350.1 | 1e-101 | protein PHR1-LIKE 1-like isoform X2 | ||||
| Swissprot | Q94CL7 | 3e-65 | PHR1_ARATH; Protein PHOSPHATE STARVATION RESPONSE 1 | ||||
| TrEMBL | A0A068U7Z0 | 1e-101 | A0A068U7Z0_COFCA; Uncharacterized protein | ||||
| STRING | cassava4.1_007430m | 8e-85 | (Manihot esculenta) | ||||
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