PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_45063_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | Trihelix | ||||||||
Protein Properties | Length: 275aa MW: 29995 Da PI: 6.9433 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 76.2 | 5e-24 | 60 | 167 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.....................lkkplWeevskkmrergferspkqCkek 53 +Wt+++v++Li ++ +++++++++ +kk++W++vs++m ergf +sp+qC++k cra_locus_45063_iso_2_len_823_ver_3 60 KWTDNMVRLLIMIVFYIGDEVGSEGnvvvdpsgkkkggggggggvlQKKGKWKSVSRAMLERGFYVSPQQCEDK 133 7****************9999975447888888899999*********************************** PP trihelix 54 wenlnkrykkikegekkr.tsessstcpyfdqle 86 +++lnkryk+++++ +k+ +++++++ +++++++ cra_locus_45063_iso_2_len_823_ver_3 134 FNDLNKRYKRVNDILGKGtACKVVEKQSLLESMD 167 ******************55***********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.0E-21 | 58 | 193 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:1900037 | Biological Process | regulation of cellular response to hypoxia | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
XPQPQPQTHQ MSAKQGYPFA PKPKNQTLAL SDDDEPAGLA ATENSADDGK RKMSPWQRMK 60 WTDNMVRLLI MIVFYIGDEV GSEGNVVVDP SGKKKGGGGG GGGVLQKKGK WKSVSRAMLE 120 RGFYVSPQQC EDKFNDLNKR YKRVNDILGK GTACKVVEKQ SLLESMDHLS PKMKEEVKKL 180 LNSKHLFFRE MCAYHNSCGH GVPSSSSGIA APEGATEAAA ASQGHHQQLQ PTRCQQHSTE 240 NASIAANLGR SEVEGSRLGK GGNQEEDDDD DDEDX |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094441.1 | 1e-116 | uncharacterized protein LOC105174138 | ||||
TrEMBL | A0A251NAH1 | 1e-109 | A0A251NAH1_PRUPE; Uncharacterized protein | ||||
TrEMBL | A0A314UXQ0 | 1e-109 | A0A314UXQ0_PRUYE; Uncharacterized protein | ||||
TrEMBL | M5VPP0 | 1e-109 | M5VPP0_PRUPE; Uncharacterized protein | ||||
STRING | XP_008241327.1 | 1e-111 | (Prunus mume) |