PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_44685_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

GRAS

Protein Properties

Length: 94aa MW: 10313.2 Da PI: 4.3674

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_44685_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	31.3	2.6e-10	41	93	1	53
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarl 53 lv+lLl+cAeav +d++la+++L+++ +sp gd++ R+ +f+ +L++rl cra_locus_44685_iso_1_len_278_ver_3 41 LVHLLLACAEAVGCRDTHLADSILNQIWPSVSPLGDSLLRVSYCFAMGLKSRL 93 68*************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	10.414	15	94	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.0E-8	41	93	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 94 aa Download sequence Send to blast
XEMDELESFQ DLEAISDHHM VPAAVVEQVS QGNRVDQGLN LVHLLLACAE AVGCRDTHLA 60 DSILNQIWPS VSPLGDSLLR VSYCFAMGLK SRLX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011022078.1	1e-31	PREDICTED: DELLA protein RGL1-like
Refseq	XP_011022079.1	1e-31	PREDICTED: DELLA protein RGL1-like
Refseq	XP_011022080.1	1e-31	PREDICTED: DELLA protein RGL1-like
TrEMBL	B9H609	2e-29	B9H609_POPTR; Uncharacterized protein
STRING	POPTR_0005s09790.1	3e-30	(Populus trichocarpa)