PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_4434_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C3H | ||||||||
Protein Properties | Length: 496aa MW: 56225.7 Da PI: 6.278 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.3 | 4e-06 | 89 | 111 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C f++ G+C+ G+rC++ Hgp cra_locus_4434_iso_4_len_2080_ver_3 89 VPCYFYFN-GFCNKGERCSYLHGP 111 69******.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.878 | 6 | 35 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 7.9E-12 | 6 | 63 | No hit | No description |
SMART | SM00356 | 0.006 | 7 | 34 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.239 | 37 | 63 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.63 | 39 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-6 | 85 | 110 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.812 | 85 | 112 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0011 | 86 | 111 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.9E-6 | 90 | 113 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MDEEVQKRNT DCVYFLASPL TCKKGVDCEY RHSETARLNP RDCWYWMSGS CLNPTCAFRH 60 PPLDGRPETA SESTVANHQS AAPVNKTNVP CYFYFNGFCN KGERCSYLHG PDETAHTWKS 120 SKTVSAAVDG PSSDRKTSTC SDSVPAPVET QSFETVPKRA AGMKIKPEQK LQQPPPNKIA 180 ERHASSFEEF AAIRSSSPIL QEAVVHSRSQ ESAGLSSGDQ KLEPVEREEW LESSPGFDVL 240 VNDGSEDFEC EDDAVFIAPN PDAEEDEDYS QYLGYDYEDN IEVDRAYPDL RNSFERGVHD 300 KYHHVDDEDM NSVAKFSFRE EDGRLDHTLQ RKRTLCQEEL GSEGRSCGDL RDYLKKRRVI 360 DGQYPTYSQV RDRERPRPVS GGHLHGRLGS KVEVHSVGSR LEDKTRSNDI YKHARPRRSI 420 LSSSRNHNNN HFKQRRSAER EDLLPDVSRK IDSRKQKSAE ESALFTGPKS LAQIKEEKRK 480 ALANGGLPXW NEQVPK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027065247.1 | 1e-167 | zinc finger CCCH domain-containing protein 32-like | ||||
TrEMBL | A0A068UPB7 | 1e-165 | A0A068UPB7_COFCA; Uncharacterized protein |