PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_442_iso_9
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family Nin-like
Protein Properties Length: 185aa    MW: 21404.3 Da    PI: 8.8901
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_442_iso_9genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK51.81.6e-161658446
                             RWP-RK  4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPh 46
                                        i+ e l++y +++++d+A  L v+  +LKriCR+yGI+RWP 
  cra_locus_442_iso_9_len_659_ver_3 16 GITREILEQYSEMELEDVAEILHVSKATLKRICRKYGIDRWPP 58
                                       6999*************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151912.65184IPR003035RWP-RK domain
PfamPF020421.2E-141760IPR003035RWP-RK domain
Gene3DG3DSA:1.10.10.108.5E-42355IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF542771.88E-18101184No hitNo description
SMARTSM006665.7E-13104185IPR000270PB1 domain
PROSITE profilePS5174515.542104185IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2404.5E-19105184No hitNo description
PfamPF005644.0E-14105184IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
CATNKRSMRT RGVEYGITRE ILEQYSEMEL EDVAEILHVS KATLKRICRK YGIDRWPPKR  60
WKGPNNTVHR DSTPPIAAAN ENEKTDAQHH NMTSTRRREQ DGGSIVVKAT YGEDTLKFQL  120
SFLAKKMDLD KQVDKRLNDP SVKSFKIKYL DEDNEWVSIA CDEDLKLCID TFRLQGKTTI  180
RLSIN