PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_43896_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | WRKY | ||||||||
Protein Properties | Length: 215aa MW: 24089.5 Da PI: 9.1189 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.4 | 1.1e-31 | 136 | 194 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s++prsYYrC++++C+vkk+v+r ++d+ +v++tYeg Hnh+ cra_locus_43896_iso_1_len_758_ver_3 136 LDDGYRWRKYGQKSVKNSKYPRSYYRCSQHTCNVKKQVQRLSKDTGIVVTTYEGIHNHP 194 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.7E-32 | 123 | 194 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.03E-27 | 129 | 195 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.495 | 131 | 196 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-36 | 136 | 195 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.6E-25 | 137 | 194 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MDDHQEAPPP PPPLPPPTTT TTPFLFTPHG HDHAFPSTSI HPPQLPPPSF LPSSVPELHD 60 IDLVGLLSAP PPVGQMPLSE TAAPPPPPLT VPEDEEMMSI INKEKRSSSS RGGKHRSKTR 120 NVPRVVFQTR SADDVLDDGY RWRKYGQKSV KNSKYPRSYY RCSQHTCNVK KQVQRLSKDT 180 GIVVTTYEGI HNHPCEKLME TLTPILKQIQ FLTRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-25 | 124 | 193 | 2 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022759566.1 | 2e-67 | probable WRKY transcription factor 43 isoform X1 | ||||
TrEMBL | A0A068UKL8 | 1e-64 | A0A068UKL8_COFCA; Uncharacterized protein | ||||
TrEMBL | A0A1U8A2W7 | 5e-65 | A0A1U8A2W7_NELNU; probable WRKY transcription factor 43 | ||||
STRING | XP_010261390.1 | 8e-66 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6374 | 24 | 33 |