PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4371_iso_7
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GATA
Protein Properties Length: 519aa    MW: 57960.7 Da    PI: 6.6322
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4371_iso_7genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.27.4e-16376412135
                                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                          C++Cg+++  Tp +Rrgpdg++tLCnaCGl+++ kg+
  cra_locus_4371_iso_7_len_2205_ver_3 376 CHHCGVSEscTPAMRRGPDGPRTLCNACGLMWANKGT 412
                                          **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009798.2E-781116IPR010399Tify domain
PROSITE profilePS5132012.85981116IPR010399Tify domain
PfamPF062003.7E-1083115IPR010399Tify domain
PROSITE profilePS510179.078149191IPR010402CCT domain
PfamPF062032.1E-10149180IPR010402CCT domain
PROSITE profilePS501148.537370418IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-10370423IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.28E-11374423No hitNo description
Gene3DG3DSA:3.30.50.102.6E-14374417IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.39E-14375422No hitNo description
PfamPF003206.8E-14376412IPR000679Zinc finger, GATA-type
PROSITE patternPS003440376403IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MASNPKARRP YDGDDDDHVV ATRIELDEDD DDDEDEDDDG GEYDDTGDDV MDDAEGVRLD  60
ASNNYPRYSH RSGPGAGLPV VAQRTSELTL SFEGEVYVFP AVTPEKVQAV LLLLGGRDVP  120
TAVPTIDVPF HPNSKVMDDT PKRSNLSRRI ASLVRFREKR KERCFDKKIR YSVRKEVAQR  180
LEVFILYCFL IIFXSRCSKY SRXTIKQVFL RMQLMFCXTL KEHLCTLQGA KMIVLLQQLS  240
NFSLRCCNKL LSLSVHCVTE KLTLASAQKR KLICQNLNRG IGNTNSTHKL ARMIHCCYLI  300
TAFYLSXFVL XLDLVKIFFS PLFQIITMLY FSPRMHRKNG QFASLKEGSG SSSWDSAKTG  360
LQAEGTCRQE TVLRRCHHCG VSESCTPAMR RGPDGPRTLC NACGLMWANK GTLRDLSKGG  420
KNMALNPVEP GTPADIKPSL IEGENSSGHP DELGTPPSKA LMAETYNHSA KPDNRNLCGS  480
REDIPMGIGR SSGDLDEQEP LVDFANTSET EIEIPTSFD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138143DTPKRS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027149418.15e-76GATA transcription factor 19-like isoform X1
TrEMBLA0A068TXE26e-75A0A068TXE2_COFCA; Uncharacterized protein
STRINGXP_006433794.19e-74(Citrus clementina)