PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_4371_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | GATA | ||||||||
Protein Properties | Length: 318aa MW: 35268.1 Da PI: 4.9822 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.1 | 3.9e-16 | 222 | 258 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++ Tp +Rrgpdg++tLCnaCGl+++ kg+ cra_locus_4371_iso_2_len_1181_ver_3 222 CHHCGVSEscTPAMRRGPDGPRTLCNACGLMWANKGT 258 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 12.859 | 81 | 116 | IPR010399 | Tify domain |
SMART | SM00979 | 8.2E-7 | 81 | 116 | IPR010399 | Tify domain |
Pfam | PF06200 | 2.0E-10 | 83 | 115 | IPR010399 | Tify domain |
Pfam | PF06203 | 6.0E-15 | 149 | 190 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.719 | 149 | 191 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 8.537 | 216 | 264 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.2E-10 | 216 | 269 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.55E-12 | 220 | 269 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.3E-14 | 220 | 263 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.57E-14 | 221 | 268 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 222 | 249 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.6E-14 | 222 | 258 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MASNPKARRP YDGDDDDHVV ATRIELDEDD DDDEDEDDDG GEYDDTGDDV MDDAEGVRLD 60 ASNNYPRYSH RSGPGAGLPV VAQRTSELTL SFEGEVYVFP AVTPEKVQAV LLLLGGRDVP 120 TAVPTIDVPF HPNSKVMDDT PKRSNLSRRI ASLVRFREKR KERCFDKKIR YSVRKEVAQR 180 MHRKNGQFAS LKEGSGSSSW DSAKTGLQAE GTCRQETVLR RCHHCGVSES CTPAMRRGPD 240 GPRTLCNACG LMWANKGTLR DLSKGGKNMA LNPVEPGTPA DIKPSLIEGE NSSGHPDELV 300 CHFWHGAEMF ENCEFYCF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 143 | DTPKRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021832695.1 | 1e-127 | GATA transcription factor 24-like, partial | ||||
Swissprot | Q8GXL7 | 6e-69 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | B9SN00 | 1e-125 | B9SN00_RICCO; GATA transcription factor, putative | ||||
STRING | XP_002527369.1 | 1e-126 | (Ricinus communis) |
Publications ? help Back to Top | |||
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