PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_4371_iso_10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | GATA | ||||||||
Protein Properties | Length: 365aa MW: 40022.2 Da PI: 4.689 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.8 | 4.7e-16 | 222 | 258 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++ Tp +Rrgpdg++tLCnaCGl+++ kg+ cra_locus_4371_iso_10_len_1743_ver_3 222 CHHCGVSEscTPAMRRGPDGPRTLCNACGLMWANKGT 258 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 12.859 | 81 | 116 | IPR010399 | Tify domain |
SMART | SM00979 | 8.2E-7 | 81 | 116 | IPR010399 | Tify domain |
Pfam | PF06200 | 2.4E-10 | 83 | 115 | IPR010399 | Tify domain |
Pfam | PF06203 | 7.3E-15 | 149 | 190 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.719 | 149 | 191 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 8.537 | 216 | 264 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.2E-10 | 216 | 269 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.6E-14 | 220 | 263 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 1.09E-11 | 220 | 269 | No hit | No description |
CDD | cd00202 | 5.15E-15 | 221 | 268 | No hit | No description |
Pfam | PF00320 | 4.3E-14 | 222 | 258 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 222 | 249 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MASNPKARRP YDGDDDDHVV ATRIELDEDD DDDEDEDDDG GEYDDTGDDV MDDAEGVRLD 60 ASNNYPRYSH RSGPGAGLPV VAQRTSELTL SFEGEVYVFP AVTPEKVQAV LLLLGGRDVP 120 TAVPTIDVPF HPNSKVMDDT PKRSNLSRRI ASLVRFREKR KERCFDKKIR YSVRKEVAQR 180 MHRKNGQFAS LKEGSGSSSW DSAKTGLQAE GTCRQETVLR RCHHCGVSES CTPAMRRGPD 240 GPRTLCNACG LMWANKGTLR DLSKGGKNMA LNPVEPGTPA DIKPSLIEGE NSSGHPDELG 300 TPPSKALMAE TYNHSAKPDN RNLCGSREDI PMGIGRSSGD LDEQEPLVDF ANTSETEIEI 360 PTSFD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 143 | DTPKRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027149418.1 | 1e-143 | GATA transcription factor 19-like isoform X1 | ||||
Swissprot | Q8GXL7 | 1e-68 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | A0A068TXE2 | 1e-144 | A0A068TXE2_COFCA; Uncharacterized protein | ||||
STRING | XP_008219237.1 | 1e-141 | (Prunus mume) | ||||
STRING | XP_006433794.1 | 1e-141 | (Citrus clementina) |
Publications ? help Back to Top | |||
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