PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_4348_iso_6

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 457aa MW: 50236.9 Da PI: 7.2901

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_4348_iso_6	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.4	2.3e-12	385	430	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el P+ +k + a++L +AveYIk+Lq cra_locus_4348_iso_6_len_2055_ver_3 385 SIAERMRRTRISDRMKKLQELFPNM----DKQTNTADMLDLAVEYIKDLQ 430 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.405	379	429	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-15	382	444	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.47E-12	383	434	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.4E-14	384	442	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-9	385	430	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.6E-13	385	435	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048573	Biological Process	photoperiodism, flowering
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MYSPEAISRD ISSNLMYSTN NNSSSGFKHG FLDGGFLKGK EILGSGSDLF LNQHQPQHQQ 60 QQNGSLMRYR SAPSSYFASF LDANNTTNNS NNSNNGDSSE SDSIFSTFMN CNEPGGNDLG 120 RRHQNDHRNN QGLQVSGSMK MEMNEVQSNP QMLQNGNGFS GSDNLVQMGY QAAVSAGGGT 180 VVGSYSVPVG VENQVQMAIN NNANHSNLIR QSSSPAGFFN GFDVMREVGK FRSSNGDTSS 240 STSGFNNHMN FSSGPSSSTR YMPSIAEDGS ETVRAANQEN VQLGNRNENG RGYAPGFSSE 300 SWNDSAFSSL KRNRDGDLKI FSDFNGLENQ DGEARNYTTS LTHHLSLPKT AGEMAAVEKY 360 LQFQQDSVVP CKIRAKRGCA THPRSIAERM RRTRISDRMK KLQELFPNMD KQTNTADMLD 420 LAVEYIKDLQ NQVQTLTETR AKCKCSKPQQ QCQNSTT

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MYSPEAISRD ISSNLMYSTN NNSSSGFKHG FLDGGFLKGK EILGSGSDLF LNQHQPQHQQ  60
QQNGSLMRYR SAPSSYFASF LDANNTTNNS NNSNNGDSSE SDSIFSTFMN CNEPGGNDLG  120
RRHQNDHRNN QGLQVSGSMK MEMNEVQSNP QMLQNGNGFS GSDNLVQMGY QAAVSAGGGT  180
VVGSYSVPVG VENQVQMAIN NNANHSNLIR QSSSPAGFFN GFDVMREVGK FRSSNGDTSS  240
STSGFNNHMN FSSGPSSSTR YMPSIAEDGS ETVRAANQEN VQLGNRNENG RGYAPGFSSE  300
SWNDSAFSSL KRNRDGDLKI FSDFNGLENQ DGEARNYTTS LTHHLSLPKT AGEMAAVEKY  360
LQFQQDSVVP CKIRAKRGCA THPRSIAERM RRTRISDRMK KLQELFPNMD KQTNTADMLD  420
LAVEYIKDLQ NQVQTLTETR AKCKCSKPQQ QCQNSTT

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00308	DAP	Transfer from AT2G42280	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027113677.1	0.0	transcription factor bHLH130-like
TrEMBL	A0A068UHK5	1e-160	A0A068UHK5_COFCA; Uncharacterized protein
STRING	PGSC0003DMT400065029	1e-121	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4435	22	38