PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_4348_iso_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 449aa MW: 49423.1 Da PI: 7.3431 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.4 | 2.2e-12 | 385 | 430 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el P+ +k + a++L +AveYIk+Lq cra_locus_4348_iso_5_len_2161_ver_3 385 SIAERMRRTRISDRMKKLQELFPNM----DKQTNTADMLDLAVEYIKDLQ 430 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.405 | 379 | 429 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.67E-15 | 382 | 442 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.41E-12 | 383 | 434 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.7E-14 | 384 | 441 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-12 | 385 | 435 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-9 | 385 | 430 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MYSPEAISRD ISSNLMYSTN NNSSSGFKHG FLDGGFLKGK EILGSGSDLF LNQHQPQHQQ 60 QQNGSLMRYR SAPSSYFASF LDANNTTNNS NNSNNGDSSE SDSIFSTFMN CNEPGGNDLG 120 RRHQNDHRNN QGLQVSGSMK MEMNEVQSNP QMLQNGNGFS GSDNLVQMGY QAAVSAGGGT 180 VVGSYSVPVG VENQVQMAIN NNANHSNLIR QSSSPAGFFN GFDVMREVGK FRSSNGDTSS 240 STSGFNNHMN FSSGPSSSTR YMPSIAEDGS ETVRAANQEN VQLGNRNENG RGYAPGFSSE 300 SWNDSAFSSL KRNRDGDLKI FSDFNGLENQ DGEARNYTTS LTHHLSLPKT AGEMAAVEKY 360 LQFQQDSVVP CKIRAKRGCA THPRSIAERM RRTRISDRMK KLQELFPNMD KQTNTADMLD 420 LAVEYIKDLQ NQVQVRKAKE ISLYSKTFT |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00308 | DAP | Transfer from AT2G42280 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027113677.1 | 0.0 | transcription factor bHLH130-like | ||||
TrEMBL | A0A068UHK5 | 1e-149 | A0A068UHK5_COFCA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400065029 | 1e-113 | (Solanum tuberosum) |