PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_4348_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 233aa MW: 26111.9 Da PI: 8.976 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.8 | 8.4e-13 | 161 | 206 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el P+ +k + a++L +AveYIk+Lq cra_locus_4348_iso_4_len_1357_ver_3 161 SIAERMRRTRISDRMKKLQELFPNM----DKQTNTADMLDLAVEYIKDLQ 206 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.405 | 155 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.58E-16 | 158 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.23E-12 | 159 | 210 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.9E-15 | 160 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.6E-13 | 161 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.7E-10 | 161 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MREVGKFRSS NGDTSSSTSG FNNHMNFSSG PSSSTRYMPS IAEDGSETVR AANQENVQLG 60 NRNENGRGYA PGFSSESWND SAFSSLKRNR DGDLKIFSDF NGLENQDGEA RNYTTSLTHH 120 LSLPKTAGEM AAVEKYLQFQ QDSVVPCKIR AKRGCATHPR SIAERMRRTR ISDRMKKLQE 180 LFPNMDKQTN TADMLDLAVE YIKDLQNQVQ TLTETRAKCK CSKPQQQCQN STT |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00308 | DAP | Transfer from AT2G42280 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027113677.1 | 1e-122 | transcription factor bHLH130-like | ||||
Swissprot | Q66GR3 | 4e-57 | BH130_ARATH; Transcription factor bHLH130 | ||||
TrEMBL | A0A068UHK5 | 1e-119 | A0A068UHK5_COFCA; Uncharacterized protein | ||||
STRING | Solyc01g086870.2.1 | 5e-98 | (Solanum lycopersicum) |
Publications ? help Back to Top | |||
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