PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_4348_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 400aa MW: 44269.7 Da PI: 7.8036

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_4348_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.6	1.9e-12	328	373	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el P+ +k + a++L +AveYIk+Lq cra_locus_4348_iso_2_len_1884_ver_3 328 SIAERMRRTRISDRMKKLQELFPNM----DKQTNTADMLDLAVEYIKDLQ 373 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.405	322	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.16E-15	325	387	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.55E-12	326	377	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-14	327	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-9	328	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.6E-13	328	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048573	Biological Process	photoperiodism, flowering
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MYSPEAISRD ISSNLMYSTN NNSSSGFKHG FLDGGFLKGK EILGSGSDLF LNQHQPQHQQ 60 QQNGSLMRYR SAPSSYFASF LDANNTTNNS NNSNNGDSSE SDSIFSTFMN CNEPGGNDLG 120 RRHQNDHRNN QGLQVSGSMK MEMNEVQSNP QMLQNGNGFS GSDNLVQMGY QAAVSAGGGT 180 VVGSYSVPVG ERIKCKWPSS STRYMPSIAE DGSETVRAAN QENVQLGNRN ENGRGYAPGF 240 SSESWNDSAF SSLKRNRDGD LKIFSDFNGL ENQDGEARNY TTSLTHHLSL PKTAGEMAAV 300 EKYLQFQQDS VVPCKIRAKR GCATHPRSIA ERMRRTRISD RMKKLQELFP NMDKQTNTAD 360 MLDLAVEYIK DLQNQVQTLT ETRAKCKCSK PQQQCQNSTT

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MYSPEAISRD ISSNLMYSTN NNSSSGFKHG FLDGGFLKGK EILGSGSDLF LNQHQPQHQQ  60
QQNGSLMRYR SAPSSYFASF LDANNTTNNS NNSNNGDSSE SDSIFSTFMN CNEPGGNDLG  120
RRHQNDHRNN QGLQVSGSMK MEMNEVQSNP QMLQNGNGFS GSDNLVQMGY QAAVSAGGGT  180
VVGSYSVPVG ERIKCKWPSS STRYMPSIAE DGSETVRAAN QENVQLGNRN ENGRGYAPGF  240
SSESWNDSAF SSLKRNRDGD LKIFSDFNGL ENQDGEARNY TTSLTHHLSL PKTAGEMAAV  300
EKYLQFQQDS VVPCKIRAKR GCATHPRSIA ERMRRTRISD RMKKLQELFP NMDKQTNTAD  360
MLDLAVEYIK DLQNQVQTLT ETRAKCKCSK PQQQCQNSTT

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00308	DAP	Transfer from AT2G42280	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087339.1	1e-108	transcription factor bHLH130
Refseq	XP_027113677.1	1e-106	transcription factor bHLH130-like
TrEMBL	A0A2G9FZD6	1e-102	A0A2G9FZD6_9LAMI; Uncharacterized protein
STRING	PGSC0003DMT400065029	9e-97	(Solanum tuberosum)