PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_43361_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB | ||||||||
Protein Properties | Length: 94aa MW: 10976.3 Da PI: 8.8749 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.3 | 4.1e-19 | 1 | 45 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W++eEdellvd+v++ G+g+W + +++ g++R++k+c++rw +yl cra_locus_43361_iso_1_len_281_ver_3 1 WSQEEDELLVDYVNKNGPGNWQSLPKRAGLNRCGKSCRLRWTNYL 45 *******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 5.8e-17 | 51 | 94 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++eE+ +++ ++++ G++ W++Ia++++ gRt++++k++w++ cra_locus_43361_iso_1_len_281_ver_3 51 RGPFSQEEEAIIISLHRESGNK-WSRIAACLP-GRTDNEIKNYWNT 94 89********************.*********.***********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 6.02E-11 | 1 | 45 | No hit | No description |
SuperFamily | SSF46689 | 1.03E-30 | 1 | 92 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.0E-17 | 1 | 45 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 1 | 52 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-10 | 1 | 47 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 25.6 | 1 | 49 | IPR017930 | Myb domain |
PROSITE profile | PS51294 | 18.627 | 50 | 94 | IPR017930 | Myb domain |
SMART | SM00717 | 6.2E-10 | 50 | 94 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 51 | 94 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-25 | 53 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.71E-11 | 53 | 94 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
WSQEEDELLV DYVNKNGPGN WQSLPKRAGL NRCGKSCRLR WTNYLRPDIK RGPFSQEEEA 60 IIISLHRESG NKWSRIAACL PGRTDNEIKN YWNT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-26 | 1 | 94 | 30 | 122 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. | |||||
UniProt | Transcription factor involved in salt stress response. Confers tolerance to salt stress (PubMed:22575450). Involved in distinct cellular processes in response to osmotic stress, including control of primary metabolism and negative regulation of short-term transcriptional responses to osmotic stress (PubMed:19211694). Can activate the steps necessary for aliphatic suberin synthesis and deposition of cell wall-associated suberin-like lamellae. Involved in the production of aliphatic suberin under abiotic stress conditions (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:22575450, ECO:0000269|PubMed:25060192}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:19211694, PubMed:25060192). Induced by osmotic stress (PubMed:19211694). Induced by abscisic acid (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:25060192}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019190833.1 | 2e-49 | PREDICTED: transcription factor MYB39-like | ||||
Swissprot | Q9LDR8 | 8e-46 | MY102_ARATH; Transcription factor MYB102 | ||||
Swissprot | Q9M0J5 | 3e-46 | MYB41_ARATH; Transcription factor MYB41 | ||||
TrEMBL | A0A396HN75 | 7e-47 | A0A396HN75_MEDTR; Putative transcription factor MYB-HB-like family | ||||
STRING | AES95816 | 1e-47 | (Medicago truncatula) | ||||
STRING | Traes_2DL_5A0300CE0.1 | 1e-47 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Publications ? help Back to Top | |||
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