PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_43257_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | AP2 | ||||||||
Protein Properties | Length: 117aa MW: 12614 Da PI: 8.4346 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 25.4 | 3.5e-08 | 11 | 38 | 28 | 55 |
AP2 28 rkrfslgkfgtaeeAakaaiaarkkleg 55 +k +lg+f t+eeAa+a++ a+ k++g cra_locus_43257_iso_1_len_349_ver_3 11 NKDLYLGTFSTEEEAAEAYDIAAIKFRG 38 699**********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 13.485 | 1 | 46 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.40E-16 | 2 | 48 | No hit | No description |
SMART | SM00380 | 1.3E-13 | 3 | 52 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-11 | 9 | 48 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-12 | 11 | 47 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
XVRRIGRVAG NKDLYLGTFS TEEEAAEAYD IAAIKFRGLN AVTNFDMSRY DVKAILESNA 60 LPIGGGAAKR LKEAQALESS RKREEMIALT STFQYGSSSN SSANACPLQA YPLMAAP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017982598.1 | 2e-61 | PREDICTED: AP2-like ethylene-responsive transcription factor PLT2 | ||||
Swissprot | Q5YGP7 | 4e-52 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A061GZ62 | 3e-60 | A0A061GZ62_THECC; AP2 domain-containing transcription factor | ||||
STRING | EOY32584 | 6e-61 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2246 | 24 | 57 |