PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_43041_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | FAR1 | ||||||||
Protein Properties | Length: 152aa MW: 17580.5 Da PI: 8.5714 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 75 | 1.5e-23 | 61 | 151 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.. 72 ++Y ++A++ GFs+rk++s+ s + g ++kr+fvC++ g++ ++kk+t +++r r++ r+gC+ak+ ++ke cra_locus_43041_iso_1_len_453_ver_3 61 EYYANFARKNGFSIRKERSRLSPQLG-VYKRDFVCYRAGFSPPRKKQTGEHQRDRKSVRCGCDAKMYLSKEMvd 133 69********************8888.*******************************************9985 PP FAR1 73 .dgkwevtkleleHnHel 89 +w v ++++ HnHel cra_locus_43041_iso_1_len_453_ver_3 134 gVLQWFVVQFSNVHNHEL 151 5568*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.4E-21 | 61 | 151 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
XIWMRRQQCP CGDWKCLITY GEEGEDTEIP SAAIKDDSGL SGAMVSPYVG MVFKSDEYAF 60 EYYANFARKN GFSIRKERSR LSPQLGVYKR DFVCYRAGFS PPRKKQTGEH QRDRKSVRCG 120 CDAKMYLSKE MVDGVLQWFV VQFSNVHNHE LX |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007026336.2 | 2e-83 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1 | ||||
Refseq | XP_007026338.2 | 2e-83 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1 | ||||
Refseq | XP_011095923.1 | 2e-83 | putative protein FAR1-RELATED SEQUENCE 10 | ||||
Refseq | XP_017979350.1 | 1e-84 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2 | ||||
Refseq | XP_021294112.1 | 2e-83 | putative protein FAR1-RELATED SEQUENCE 10 | ||||
Swissprot | Q9LKR4 | 2e-59 | FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10 | ||||
TrEMBL | A0A061GHB1 | 7e-84 | A0A061GHB1_THECC; Far1-related sequence 10 isoform 4 | ||||
STRING | EOY28958 | 8e-83 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3021 | 17 | 40 |
Publications ? help Back to Top | |||
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