PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4298_iso_10
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 567aa    MW: 62985.4 Da    PI: 7.0707
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4298_iso_10genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07536563128
                                           TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS
                       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIa 28 
                                           ++rW++ E++ l  av+++G g+Wk+I 
  cra_locus_4298_iso_10_len_1699_ver_3 536 KKRWSALEEDALRSAVEKHGYGNWKLIL 563
                                           68************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-7530563IPR009057Homeodomain-like
PROSITE profilePS5129410.623531567IPR017930Myb domain
SuperFamilySSF466897.26E-7533564IPR009057Homeodomain-like
CDDcd116604.62E-6539565No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
XLSSLKSLLL SFTSFPRKKT PLHVPDADIG DYXRSPHAFP SMSSINTKIF PESRGGSXKA  60
TEGFLYWLSK YSWNKRKHGP RIIADCLLKL LLHIIQSPNL DMDSDLGPWI LESLLRLPLQ  120
SRILKSLIKV VPLPNDNPII KKIILLRKIE SEISKGCVSE SILDCLERIE ELDFQSGMDH  180
DSESLKAAYC AVAVTCTVQS IADKGADSKF KYFEAVKRIW KEKVCKMEKV ENVGLISEEL  240
LSWKDEIEAA LWEESVCDDV LKRTEGMDAV GAVGAYVHEE KGKMGPSFLE FVAQKARTDD  300
TLMKLLFDVG NANLGQGGEK KENLAIAADQ GLGRSDNREG HKEIVLSKAK HIALKRTRGP  360
RFGISRGSKI ADTGNSEVDP SGKHCDLLPT PEVNKVQEDL RSSSLELQAV VKDPLPDALN  420
LAEMLLSFTE KENTSKEIVV LSKVGDDPSF VESSKAVQAN EEDLSKHCQD VRTNAAETSL  480
MESNGTVRAF ECDDSIDETP DISPSGKGLR LPSPKGVNVS PLKKYEANKL TKRRKKKRWS  540
ALEEDALRSA VEKHGYGNWK LILMTNR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1531537KRRKKKR
2532537RRKKKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027091291.11e-159uncharacterized protein LOC113712180 isoform X2
RefseqXP_027112461.11e-159uncharacterized protein LOC113731391 isoform X2
TrEMBLA0A068U6V91e-156A0A068U6V9_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37742439