PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_42945_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | GRAS | ||||||||
Protein Properties | Length: 146aa MW: 16905 Da PI: 6.9465 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 133.1 | 3.1e-41 | 2 | 146 | 178 | 323 |
GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251 fn+ +akr+++++leeL+++++E+++Vn+ ++l + +de+v +++rd+v+k++k+++P+v+v+ +a +n++ cra_locus_42945_iso_1_len_435_ver_3 2 FNA-IAKRWDAISLEELKIEKDEMVVVNCLYRLRNAPDETVVESNPRDAVIKFIKKINPHVFVHGVLNAGYNAP 74 899.7********************************************************************* PP GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323 F +rf al+++s++fd +ea+lp+e++er + Er +lgr+++nv+acegaer+ r ++++W+ r ++aG cra_locus_42945_iso_1_len_435_ver_3 75 FFTTRFKGALHHFSSMFDIFEANLPPEDQERFMFERGVLGRDVMNVIACEGAERVDRPDSYKQWQVRNQRAG 146 *******************************************************************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 27.186 | 1 | 146 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-38 | 2 | 146 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
XFNAIAKRWD AISLEELKIE KDEMVVVNCL YRLRNAPDET VVESNPRDAV IKFIKKINPH 60 VFVHGVLNAG YNAPFFTTRF KGALHHFSSM FDIFEANLPP EDQERFMFER GVLGRDVMNV 120 IACEGAERVD RPDSYKQWQV RNQRAG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027077214.1 | 3e-74 | scarecrow-like protein 14 | ||||
Refseq | XP_027168303.1 | 3e-74 | scarecrow-like protein 33 | ||||
Swissprot | P0C883 | 1e-55 | SCL33_ARATH; Scarecrow-like protein 33 | ||||
TrEMBL | A0A068UPY0 | 2e-70 | A0A068UPY0_COFCA; Uncharacterized protein | ||||
STRING | evm.model.supercontig_81.122 | 5e-65 | (Carica papaya) | ||||
STRING | GLYMA13G41261.1 | 4e-65 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |