PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_4276_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HD-ZIP

Protein Properties

Length: 288aa MW: 33004.9 Da PI: 6.69

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_4276_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59	7.7e-19	31	85	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++f+++q++ Le+ F+++ ++ +++ +LA++lgL rqV +WFqN+Ra++k cra_locus_4276_iso_2_len_1285_ver_3 31 NNKRRFSDDQIKCLESIFKSETKLEPRKKLQLARELGLHPRQVAIWFQNKRARWK 85 56789*************************************************9 PP
2	HD-ZIP_I/II	121.4	4.6e-39	32	123	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalke 75 +krr+s++q+k+LE+ F++e+kLep++K +lareLgl+prqva+WFqn+RAR+k+kqlE+dy+ L+++y++l++ cra_locus_4276_iso_2_len_1285_ver_3 32 NKRRFSDDQIKCLESIFKSETKLEPRKKLQLARELGLHPRQVAIWFQNKRARWKSKQLEEDYSLLRDNYNTLSS 105 79********************************************************************** PP HD-ZIP_I/II 76 enerLekeveeLreelke 93 + e L+ke+++L ++l++ cra_locus_4276_iso_2_len_1285_ver_3 106 QFEILNKEKQSLLTQLQK 123 ***********99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.6E-19	15	89	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.589	27	87	IPR001356	Homeobox domain
SMART	SM00389	2.8E-17	29	91	IPR001356	Homeobox domain
Pfam	PF00046	2.8E-16	31	85	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.8E-19	33	94	IPR009057	Homeodomain-like
CDD	cd00086	1.44E-14	34	88	No hit	No description
PRINTS	PR00031	2.0E-5	58	67	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	62	85	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.0E-5	67	83	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.3E-12	87	127	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MLEAAEEEYN SSCSIGAAEY FGSTKKKKSK NNKRRFSDDQ IKCLESIFKS ETKLEPRKKL 60 QLARELGLHP RQVAIWFQNK RARWKSKQLE EDYSLLRDNY NTLSSQFEIL NKEKQSLLTQ 120 LQKLNDLIEK SHQKKKEGLS RELEELDDRG PIKKSELIDH VKPQTIGLRL EYGVGGGLSL 180 SDDDCGGGIN KTHNLGLEED DPELLGVVEP ADSSLTSPEE WGSLESEGLL LSNHPNTSTY 240 QWWDFWSXSR KPEQINNLLL ASIGPRSPRY WDRAWTRAGV MRGMLIFS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269\|PubMed:15604708, ECO:0000269\|PubMed:8771791}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00320	DAP	Transfer from AT2G46680	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016538251.1	4e-69	PREDICTED: homeobox-leucine zipper protein ATHB-12-like
Refseq	XP_016538252.1	4e-69	PREDICTED: homeobox-leucine zipper protein ATHB-12-like
Swissprot	P46897	3e-59	ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBL	A0A2R6RCH7	9e-77	A0A2R6RCH7_ACTCH; Homeobox-leucine zipper protein like
STRING	PGSC0003DMT400000694	1e-67	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2041	23	63

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou SF, et al. Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis. New Phytol., 2015. 208(1): p. 188-97 [PMID:25919792]