PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_4230_iso_7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 521aa MW: 59088.4 Da PI: 7.4755 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 63.6 | 3.1e-20 | 156 | 246 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 f kvl++s+v++ ++ lp +f++ h +++++ ++lede+g+++e+k+i +k++ l++GW++Fv+a++L cra_locus_4230_iso_7_len_1966_ver_3 156 FMKVLVRSHVGSCFWMGLPVPFCKLHL--PRNDTPVVLEDENGEKFEIKYIAEKTG----LSAGWRKFVSAHKL 223 89*********************9884..234567***************777777....************** PP -TT-EEEEEE-SSSEE..EEEEE-S CS B3 75 kegDfvvFkldgrsefelvvkvfrk 99 egD++vF+l++ ++f +v v+r+ cra_locus_4230_iso_7_len_1966_ver_3 224 VEGDVLVFQLISPTTF--KVYVVRA 246 **********986666..7777765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.14E-24 | 151 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-21 | 151 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.88E-27 | 154 | 245 | No hit | No description |
Pfam | PF02362 | 5.4E-18 | 156 | 245 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.198 | 156 | 247 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.7E-25 | 156 | 247 | IPR003340 | B3 DNA binding domain |
Pfam | PF05266 | 4.3E-8 | 394 | 507 | IPR007930 | Protein of unknown function DUF724 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 521 aa Download sequence Send to blast |
MRLKIKQVQP SPSPDFQNQE NHLDLDVMKK EIEENDNDKG NGCGWLNPEE NNSNNKSPPP 60 PDLSPTTPSV PQTLGKRKRK PKELIDEISP IFIRRKKKKA SNSASDQGMP DPGRSKLSKQ 120 VKAADDGSAP PVPLKSPTVV RAEEVQSNLG NEYPSFMKVL VRSHVGSCFW MGLPVPFCKL 180 HLPRNDTPVV LEDENGEKFE IKYIAEKTGL SAGWRKFVSA HKLVEGDVLV FQLISPTTFK 240 VYVVRANDMN EVDGALSLLN LETLTKQGDA GGAMDLKNKK KKRQKSLPLT VVQKKKQKAD 300 LSKSLVPHLG QLEEQSGGND SDEVASEVLE CTKFLGEAGR FRDIKSFEDF HISVNGVCID 360 SELPEHVRRK YYELCCSKEA FLHERFLPGL HCKLAAGIIF EAVNTTDAIK ACKITTSREE 420 FEKWEKSLRS FELLGMNVGF LRERLRRLQT LVFDVEDARE TKRYWEAKTE RAQTEDEIRN 480 LEAKLEELKE VSMRYDADIE VLRSKAENYE LMFQREVNAP W |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 76 | 96 | RKRKPKELIDEISPIFIRRKK |
2 | 77 | 98 | KRKPKELIDEISPIFIRRKKKK |
3 | 93 | 98 | RRKKKK |
4 | 278 | 295 | KKKKRQKSLPLTVVQKKK |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027154044.1 | 0.0 | B3 domain-containing protein Os01g0234100-like | ||||
TrEMBL | A0A068U4F2 | 0.0 | A0A068U4F2_COFCA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400040786 | 0.0 | (Solanum tuberosum) |