PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_4230_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Protein Properties

Length: 413aa MW: 46919.7 Da PI: 6.7193

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_4230_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	64.2	2.1e-20	48	138	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 f kvl++s+v++ ++ lp +f++ h +++++ ++lede+g+++e+k+i +k++ l++GW++Fv+a++L cra_locus_4230_iso_4_len_2080_ver_3 48 FMKVLVRSHVGSCFWMGLPVPFCKLHL--PRNDTPVVLEDENGEKFEIKYIAEKTG----LSAGWRKFVSAHKL 115 89*******************9884..234567***********777777....********** PP -TT-EEEEEE-SSSEE..EEEEE-S CS B3 75 kegDfvvFkldgrsefelvvkvfrk 99 egD++vF+l++ ++f +v v+r+ cra_locus_4230_iso_4_len_2080_ver_3 116 VEGDVLVFQLISPTTF--KVYVVRA 138 ********986666..7777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.1E-22	43	139	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.16E-24	43	139	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.03E-27	46	137	No hit	No description
PROSITE profile	PS50863	14.198	48	139	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.7E-18	48	137	IPR003340	B3 DNA binding domain
SMART	SM01019	3.7E-25	48	139	IPR003340	B3 DNA binding domain
Pfam	PF05266	2.8E-8	286	399	IPR007930	Protein of unknown function DUF724

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MPDPGRSKLS KQVKAADDGS APPVPLKSPT VVRAEEVQSN LGNEYPSFMK VLVRSHVGSC 60 FWMGLPVPFC KLHLPRNDTP VVLEDENGEK FEIKYIAEKT GLSAGWRKFV SAHKLVEGDV 120 LVFQLISPTT FKVYVVRAND MNEVDGALSL LNLETLTKQG DAGGAMDLKN KKKKRQKSLP 180 LTVVQKKKQK ADLSKSLVPH LGQLEEQSGG NDSDEVASEV LECTKFLGEA GRFRDIKSFE 240 DFHISVNGVC IDSELPEHVR RKYYELCCSK EAFLHERFLP GLHCKLAAGI IFEAVNTTDA 300 IKACKITTSR EEFEKWEKSL RSFELLGMNV GFLRERLRRL QTLVFDVEDA RETKRYWEAK 360 TERAQTEDEI RNLEAKLEEL KEVSMRYDAD IEVLRSKAEN YELMFQREVN APW

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MPDPGRSKLS KQVKAADDGS APPVPLKSPT VVRAEEVQSN LGNEYPSFMK VLVRSHVGSC  60
FWMGLPVPFC KLHLPRNDTP VVLEDENGEK FEIKYIAEKT GLSAGWRKFV SAHKLVEGDV  120
LVFQLISPTT FKVYVVRAND MNEVDGALSL LNLETLTKQG DAGGAMDLKN KKKKRQKSLP  180
LTVVQKKKQK ADLSKSLVPH LGQLEEQSGG NDSDEVASEV LECTKFLGEA GRFRDIKSFE  240
DFHISVNGVC IDSELPEHVR RKYYELCCSK EAFLHERFLP GLHCKLAAGI IFEAVNTTDA  300
IKACKITTSR EEFEKWEKSL RSFELLGMNV GFLRERLRRL QTLVFDVEDA RETKRYWEAK  360
TERAQTEDEI RNLEAKLEEL KEVSMRYDAD IEVLRSKAEN YELMFQREVN APW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	170	187	KKKKRQKSLPLTVVQKKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027078446.1	0.0	B3 domain-containing protein Os01g0234100-like
TrEMBL	A0A068U4F2	0.0	A0A068U4F2_COFCA; Uncharacterized protein
STRING	Solyc02g090710.2.1	0.0	(Solanum lycopersicum)