PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_410_iso_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | Whirly | ||||||||
Protein Properties | Length: 241aa MW: 27208.9 Da PI: 10.6388 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 175.2 | 1.4e-54 | 66 | 204 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesce 75 s++k+kaa+ + +f++ dsg ++++r+G+++l++ ++++erky+Wekkq falsatev+ l++l+++ s e cra_locus_410_iso_5_len_1080_ver_3 66 SIFKGKAAFLQNQYFRQFSKSDSGGFRVDRRGSIMLKFWPSVGERKYNWEKKQAFALSATEVGALINLGPHSSVE 140 79************************************************************************* PP Whirly 76 ffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 ffhdp++k+sn+G+vrk+l+++ pdGsG++++l+v n+++++ne+f+vPv+ aef v+r++++ cra_locus_410_iso_5_len_1080_ver_3 141 FFHDPSMKSSNAGQVRKSLSIKAQPDGSGYLFSLNVVNNILQTNERFVVPVTAAEFEVMRTAFS 204 *************************************************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 2.5E-67 | 54 | 222 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 3.22E-57 | 59 | 221 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 8.7E-53 | 67 | 201 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MMLRRVSNQF LKSIFRNQIF PKRTSAEVVG TSFWFQSITT QSEKSTAGKN FRADGKLGDR 60 VFASYSIFKG KAAFLQNQYF RQFSKSDSGG FRVDRRGSIM LKFWPSVGER KYNWEKKQAF 120 ALSATEVGAL INLGPHSSVE FFHDPSMKSS NAGQVRKSLS IKAQPDGSGY LFSLNVVNNI 180 LQTNERFVVP VTAAEFEVMR TAFSFALPHI LGWDQYTNQP PQSVSGKPLQ SALLMESEWD 240 K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3n1h_A | 4e-81 | 55 | 220 | 5 | 170 | StWhy2 |
3n1i_A | 4e-81 | 55 | 220 | 5 | 170 | protein StWhy2 |
3n1j_A | 4e-81 | 55 | 220 | 5 | 170 | Protein StWhy2 |
3n1k_A | 4e-81 | 55 | 220 | 5 | 170 | protein StWhy2 |
3n1l_A | 4e-81 | 55 | 220 | 5 | 170 | protein StWhy2 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027092747.1 | 1e-102 | single-stranded DNA-binding protein WHY2, mitochondrial-like | ||||
Swissprot | D9J034 | 1e-93 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A0A1S4DCK9 | 1e-95 | A0A1S4DCK9_TOBAC; single-stranded DNA-bindig protein WHY2, mitochondrial isoform X3 | ||||
TrEMBL | A0A1S4DCW1 | 1e-95 | A0A1S4DCW1_TOBAC; single-stranded DNA-bindig protein WHY2, mitochondrial isoform X4 | ||||
TrEMBL | A0A1U7W2E7 | 1e-95 | A0A1U7W2E7_NICSY; single-stranded DNA-bindig protein WHY2, mitochondrial isoform X3 | ||||
TrEMBL | A0A1U7WDQ3 | 1e-95 | A0A1U7WDQ3_NICSY; single-stranded DNA-bindig protein WHY2, mitochondrial isoform X2 | ||||
STRING | XP_009772771.1 | 1e-94 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9782 | 22 | 28 |