PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_410_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Whirly

Protein Properties

Length: 188aa MW: 21259.9 Da PI: 9.8736

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_410_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	165.2	1.8e-51	28	151	16	139
Whirly 16 ptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkv 90 +f++ dsg ++++r+G+++l++ ++++erky+Wekkq falsatev+ l++l+++ s effhdp++k+sn+G+v cra_locus_410_iso_4_len_1397_ver_3 28 RQFSKSDSGGFRVDRRGSIMLKFWPSVGERKYNWEKKQAFALSATEVGALINLGPHSSVEFFHDPSMKSSNAGQV 102 579999******************************************************************* PP Whirly 91 rkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 rk+l+++ pdGsG++++l+v n+++++ne+f+vPv+ aef v+r++++ cra_locus_410_iso_4_len_1397_ver_3 103 RKSLSIKAQPDGSGYLFSLNVVNNILQTNERFVVPVTAAEFEVMRTAFS 151 ********************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54447	1.26E-49	27	168	IPR009044	ssDNA-binding transcriptional regulator
Gene3D	G3DSA:2.30.31.10	1.4E-59	29	169	IPR009044	ssDNA-binding transcriptional regulator
Pfam	PF08536	5.0E-50	29	148	IPR013742	Plant transcription factor

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006281	Biological Process	DNA repair
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005739	Cellular Component	mitochondrion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
XENSGIEYLP PILFSRAKLR FLQNQYFRQF SKSDSGGFRV DRRGSIMLKF WPSVGERKYN 60 WEKKQAFALS ATEVGALINL GPHSSVEFFH DPSMKSSNAG QVRKSLSIKA QPDGSGYLFS 120 LNVVNNILQT NERFVVPVTA AEFEVMRTAF SFALPHILGW DQYTNQPPQS VSGKPLQSAL 180 LMESEWDK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3r9y_A	7e-73	30	167	33	170	Why2 protein
3r9z_A	7e-73	30	167	33	170	Why2 protein
3ra0_A	7e-73	30	167	33	170	Why2 protein
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Functional Description ? help Back to Top
Source	Description
UniProt	Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269\|PubMed:21911368}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027089713.1	4e-81	single-stranded DNA-binding protein WHY2, mitochondrial-like
Refseq	XP_027148493.1	4e-81	single-stranded DNA-binding protein WHY2, mitochondrial
Swissprot	D9J034	2e-77	WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBL	A0A2G9G9W4	6e-79	A0A2G9G9W4_9LAMI; Uncharacterized protein
STRING	Migut.C01402.1.p	3e-77	(Erythranthe guttata)