PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_410_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | Whirly | ||||||||
Protein Properties | Length: 183aa MW: 20753.7 Da PI: 10.0472 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 165.3 | 1.6e-51 | 23 | 146 | 16 | 139 |
Whirly 16 ptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkv 90 +f++ dsg ++++r+G+++l++ ++++erky+Wekkq falsatev+ l++l+++ s effhdp++k+sn+G+v cra_locus_410_iso_3_len_1184_ver_3 23 RQFSKSDSGGFRVDRRGSIMLKFWPSVGERKYNWEKKQAFALSATEVGALINLGPHSSVEFFHDPSMKSSNAGQV 97 579999********************************************************************* PP Whirly 91 rkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 rk+l+++ pdGsG++++l+v n+++++ne+f+vPv+ aef v+r++++ cra_locus_410_iso_3_len_1184_ver_3 98 RKSLSIKAQPDGSGYLFSLNVVNNILQTNERFVVPVTAAEFEVMRTAFS 146 **********************************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54447 | 1.18E-49 | 22 | 163 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 4.6E-50 | 24 | 143 | IPR013742 | Plant transcription factor |
Gene3D | G3DSA:2.30.31.10 | 1.3E-59 | 24 | 164 | IPR009044 | ssDNA-binding transcriptional regulator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
IEYLPPILFS RAKLRFLQNQ YFRQFSKSDS GGFRVDRRGS IMLKFWPSVG ERKYNWEKKQ 60 AFALSATEVG ALINLGPHSS VEFFHDPSMK SSNAGQVRKS LSIKAQPDGS GYLFSLNVVN 120 NILQTNERFV VPVTAAEFEV MRTAFSFALP HILGWDQYTN QPPQSVSGKP LQSALLMESE 180 WDK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3n1h_A | 6e-73 | 25 | 162 | 33 | 170 | StWhy2 |
3n1i_A | 6e-73 | 25 | 162 | 33 | 170 | protein StWhy2 |
3n1j_A | 6e-73 | 25 | 162 | 33 | 170 | Protein StWhy2 |
3n1k_A | 6e-73 | 25 | 162 | 33 | 170 | protein StWhy2 |
3n1l_A | 6e-73 | 25 | 162 | 33 | 170 | protein StWhy2 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027089713.1 | 4e-81 | single-stranded DNA-binding protein WHY2, mitochondrial-like | ||||
Refseq | XP_027148493.1 | 3e-81 | single-stranded DNA-binding protein WHY2, mitochondrial | ||||
Swissprot | D9J034 | 2e-77 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A0A2G9G9W4 | 5e-79 | A0A2G9G9W4_9LAMI; Uncharacterized protein | ||||
STRING | XP_009772771.1 | 3e-77 | (Nicotiana sylvestris) |