PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_4107_iso_7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 313aa MW: 32821.3 Da PI: 6.4041 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.3 | 1.5e-09 | 162 | 206 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a +L + v+Y+k L cra_locus_4107_iso_7_len_1851_ver_3 162 HSIAERLRRERIAERIRALQELVPSvN------KTDRAVMLDEIVDYVKFL 206 99***********************55......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.32E-15 | 155 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.044 | 157 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-14 | 159 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.8E-7 | 162 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-10 | 163 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MANNPSEAPT DDFLEQILGF PAYTGAGAGA DTNLSPGNDV AALAGAQVPM MLQLSSGDGS 60 AHLGGVGLGA GLGIGSAGAF HGGGFPLGLS LEQGKGGFMK MDEPAGSGKR FRDDIMDGRA 120 ASSSLKPGFH GQPVPNTVPA VPHPPAIRPR VRARRGQATD PHSIAERLRR ERIAERIRAL 180 QELVPSVNKT DRAVMLDEIV DYVKFLRLQV KVLSMSRLGG AGAVAPLVSD IPISSVEDDV 240 GEGGRVQPAW EKWSNDGTER QVAKLMEENV GSAMQFLQSK ALCIMPISLA SAICHTQPPE 300 TTSLIKPETH PSP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 166 | 171 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027095851.1 | 1e-167 | transcription factor UNE12 isoform X1 | ||||
Swissprot | O22768 | 1e-124 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A068U7Z5 | 1e-165 | A0A068U7Z5_COFCA; Uncharacterized protein | ||||
STRING | evm.model.supercontig_52.97 | 1e-153 | (Carica papaya) |
Publications ? help Back to Top | |||
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